miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23326 3' -64.4 NC_005259.1 + 50698 0.73 0.11465
Target:  5'- gCUGCuCGUcgUCGCGCUugaGCCGGGUGCuGGCu -3'
miRNA:   3'- -GAUG-GCG--GGCGUGG---CGGCCCACG-CCG- -5'
23326 3' -64.4 NC_005259.1 + 50052 0.73 0.111711
Target:  5'- -cACCGcCCCGCACgCGaaaCGGGguguagaccUGCGGCa -3'
miRNA:   3'- gaUGGC-GGGCGUG-GCg--GCCC---------ACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 48171 0.81 0.030181
Target:  5'- -aACCGCCCccgcCGCCGCCGGGUGuCGGa -3'
miRNA:   3'- gaUGGCGGGc---GUGGCGGCCCAC-GCCg -5'
23326 3' -64.4 NC_005259.1 + 47973 0.72 0.144526
Target:  5'- -cGCCGCCCGCGaauaUGCCGGGcaGC-GCa -3'
miRNA:   3'- gaUGGCGGGCGUg---GCGGCCCa-CGcCG- -5'
23326 3' -64.4 NC_005259.1 + 46889 0.67 0.293533
Target:  5'- -cGCCGCCCGCGaugagcgcCCGCCGagcaGUccGCGuGCg -3'
miRNA:   3'- gaUGGCGGGCGU--------GGCGGCc---CA--CGC-CG- -5'
23326 3' -64.4 NC_005259.1 + 46772 0.7 0.189184
Target:  5'- -cGCCGacagCCGCGcCCGCCGGGccgaacaccgagccUGCGaGCg -3'
miRNA:   3'- gaUGGCg---GGCGU-GGCGGCCC--------------ACGC-CG- -5'
23326 3' -64.4 NC_005259.1 + 46556 0.67 0.293533
Target:  5'- -cGCCGaCCGCGCCuaUGGucGCGGCg -3'
miRNA:   3'- gaUGGCgGGCGUGGcgGCCcaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 46166 0.75 0.081549
Target:  5'- aUACCGCuuGC-CCGCCGGGcGCGuCg -3'
miRNA:   3'- gAUGGCGggCGuGGCGGCCCaCGCcG- -5'
23326 3' -64.4 NC_005259.1 + 46069 0.79 0.044094
Target:  5'- -aGCUGCUCaaGCACCGCCGGGgcgaGCGGUg -3'
miRNA:   3'- gaUGGCGGG--CGUGGCGGCCCa---CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 45836 0.79 0.04292
Target:  5'- aUGCCGUCCGCACCaCCGGGgccgGUGGg -3'
miRNA:   3'- gAUGGCGGGCGUGGcGGCCCa---CGCCg -5'
23326 3' -64.4 NC_005259.1 + 45751 0.7 0.19537
Target:  5'- -cACCGCCUcggggaugaGCACgcccuCGCCGGGUGCcaGCa -3'
miRNA:   3'- gaUGGCGGG---------CGUG-----GCGGCCCACGc-CG- -5'
23326 3' -64.4 NC_005259.1 + 45517 0.68 0.261178
Target:  5'- -cACCGCgCCGguguugGCCGCCGuGGcUGCGaGCg -3'
miRNA:   3'- gaUGGCG-GGCg-----UGGCGGC-CC-ACGC-CG- -5'
23326 3' -64.4 NC_005259.1 + 45333 0.7 0.200249
Target:  5'- aCUGCgugGCCUGCGCCGCCuGGGccGCcGCg -3'
miRNA:   3'- -GAUGg--CGGGCGUGGCGG-CCCa-CGcCG- -5'
23326 3' -64.4 NC_005259.1 + 45162 0.66 0.336379
Target:  5'- -gGCCGCCCuuggccuuguuGCG-CGCCGaGGUcagcGCGGUg -3'
miRNA:   3'- gaUGGCGGG-----------CGUgGCGGC-CCA----CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 44993 0.74 0.093035
Target:  5'- aCUGCCGaggcaCCGCcgACCGCCGGG-GCcGCg -3'
miRNA:   3'- -GAUGGCg----GGCG--UGGCGGCCCaCGcCG- -5'
23326 3' -64.4 NC_005259.1 + 44920 0.67 0.321607
Target:  5'- -cGCCGCauaCGCGCUGaUCGGGUccaUGGCa -3'
miRNA:   3'- gaUGGCGg--GCGUGGC-GGCCCAc--GCCG- -5'
23326 3' -64.4 NC_005259.1 + 44653 0.71 0.152069
Target:  5'- -cGCCGCCCGacucgaacgccaCACCGuuGGGcagcGUGGCc -3'
miRNA:   3'- gaUGGCGGGC------------GUGGCggCCCa---CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 43252 0.73 0.11465
Target:  5'- aUGCCGCCCGC---GCCGGGUGCc-- -3'
miRNA:   3'- gAUGGCGGGCGuggCGGCCCACGccg -5'
23326 3' -64.4 NC_005259.1 + 42480 0.67 0.299679
Target:  5'- -gGCCcgGCCCGUAgaGCCGugacccguccggcGGUGUGGCc -3'
miRNA:   3'- gaUGG--CGGGCGUggCGGC-------------CCACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 40453 0.68 0.255066
Target:  5'- cCUGCCGgUgugguugaCGUACUGCCGGGccgcGCGGUu -3'
miRNA:   3'- -GAUGGCgG--------GCGUGGCGGCCCa---CGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.