miRNA display CGI


Results 41 - 60 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23326 3' -64.4 NC_005259.1 + 26387 0.77 0.057694
Target:  5'- cCUGuuGCUCGCGauuccgaCGCCGGGcGCGGCg -3'
miRNA:   3'- -GAUggCGGGCGUg------GCGGCCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 36854 0.77 0.054683
Target:  5'- -cGCCGCCCGCugCGCCGu-UGCuGGCa -3'
miRNA:   3'- gaUGGCGGGCGugGCGGCccACG-CCG- -5'
23326 3' -64.4 NC_005259.1 + 46069 0.79 0.044094
Target:  5'- -aGCUGCUCaaGCACCGCCGGGgcgaGCGGUg -3'
miRNA:   3'- gaUGGCGGG--CGUGGCGGCCCa---CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 45836 0.79 0.04292
Target:  5'- aUGCCGUCCGCACCaCCGGGgccgGUGGg -3'
miRNA:   3'- gAUGGCGGGCGUGGcGGCCCa---CGCCg -5'
23326 3' -64.4 NC_005259.1 + 48171 0.81 0.030181
Target:  5'- -aACCGCCCccgcCGCCGCCGGGUGuCGGa -3'
miRNA:   3'- gaUGGCGGGc---GUGGCGGCCCAC-GCCg -5'
23326 3' -64.4 NC_005259.1 + 26804 0.73 0.111711
Target:  5'- -cGCCGCCCGguUgGCCGGuaccgGCGGUg -3'
miRNA:   3'- gaUGGCGGGCguGgCGGCCca---CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 50698 0.73 0.11465
Target:  5'- gCUGCuCGUcgUCGCGCUugaGCCGGGUGCuGGCu -3'
miRNA:   3'- -GAUG-GCG--GGCGUGG---CGGCCCACG-CCG- -5'
23326 3' -64.4 NC_005259.1 + 7573 0.7 0.176442
Target:  5'- -cACCGUUCGCGCCGCCGccgccgaccucaaGGU-CGGUg -3'
miRNA:   3'- gaUGGCGGGCGUGGCGGC-------------CCAcGCCG- -5'
23326 3' -64.4 NC_005259.1 + 37387 0.71 0.172511
Target:  5'- -cACCGCCCGCcgcGCCGCCcauGGUGuuGUu -3'
miRNA:   3'- gaUGGCGGGCG---UGGCGGc--CCACgcCG- -5'
23326 3' -64.4 NC_005259.1 + 26039 0.71 0.172511
Target:  5'- -gGCCaGCa-GCGCCGCCGGGU-UGGCc -3'
miRNA:   3'- gaUGG-CGggCGUGGCGGCCCAcGCCG- -5'
23326 3' -64.4 NC_005259.1 + 32911 0.71 0.168236
Target:  5'- -aGCCaCCCgGC-CCGCuCGGGcGCGGCg -3'
miRNA:   3'- gaUGGcGGG-CGuGGCG-GCCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 64441 0.71 0.164055
Target:  5'- -aGCUGCCgggGCGCUGCCcuuGGG-GCGGCg -3'
miRNA:   3'- gaUGGCGGg--CGUGGCGG---CCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 31255 0.71 0.164055
Target:  5'- gUGCCGCCC-CACaCGCCGcaguaGGcgGUGGCg -3'
miRNA:   3'- gAUGGCGGGcGUG-GCGGC-----CCa-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 44653 0.71 0.152069
Target:  5'- -cGCCGCCCGacucgaacgccaCACCGuuGGGcagcGUGGCc -3'
miRNA:   3'- gaUGGCGGGC------------GUGGCggCCCa---CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 24338 0.72 0.148254
Target:  5'- -cACgCGCUgGCcuACCGCCGGGUGCucGCa -3'
miRNA:   3'- gaUG-GCGGgCG--UGGCGGCCCACGc-CG- -5'
23326 3' -64.4 NC_005259.1 + 47973 0.72 0.144526
Target:  5'- -cGCCGCCCGCGaauaUGCCGGGcaGC-GCa -3'
miRNA:   3'- gaUGGCGGGCGUg---GCGGCCCa-CGcCG- -5'
23326 3' -64.4 NC_005259.1 + 66260 0.72 0.140884
Target:  5'- -cGCgGCCCGC---GCCGGGcgGCGGCu -3'
miRNA:   3'- gaUGgCGGGCGuggCGGCCCa-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 14317 0.72 0.127142
Target:  5'- -gGCCGCCCucgaCGCCGCCGcccgcGUGCGGg -3'
miRNA:   3'- gaUGGCGGGc---GUGGCGGCc----CACGCCg -5'
23326 3' -64.4 NC_005259.1 + 43252 0.73 0.11465
Target:  5'- aUGCCGCCCGC---GCCGGGUGCc-- -3'
miRNA:   3'- gAUGGCGGGCGuggCGGCCCACGccg -5'
23326 3' -64.4 NC_005259.1 + 8353 0.73 0.11465
Target:  5'- gCUGCUGCCgGUAUCGCuCGGcG-GCGGCc -3'
miRNA:   3'- -GAUGGCGGgCGUGGCG-GCC-CaCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.