miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23326 3' -64.4 NC_005259.1 + 65863 0.66 0.328932
Target:  5'- cCU-CCGUCUGCcCCGgUGGG-GCGGUc -3'
miRNA:   3'- -GAuGGCGGGCGuGGCgGCCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 52245 0.66 0.328932
Target:  5'- aCUACCGCCCG-GCCccucucagggggGCCGGGcagacaggacCGGCc -3'
miRNA:   3'- -GAUGGCGGGCgUGG------------CGGCCCac--------GCCG- -5'
23326 3' -64.4 NC_005259.1 + 44920 0.67 0.321607
Target:  5'- -cGCCGCauaCGCGCUGaUCGGGUccaUGGCa -3'
miRNA:   3'- gaUGGCGg--GCGUGGC-GGCCCAc--GCCG- -5'
23326 3' -64.4 NC_005259.1 + 7189 0.67 0.321607
Target:  5'- gUGCCcgGCCUGCGgaCGCacCGGGcUGCGGUg -3'
miRNA:   3'- gAUGG--CGGGCGUg-GCG--GCCC-ACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 19556 0.67 0.314404
Target:  5'- ---aUGCCCGCAgCCGUCGGGacaGCGccGCa -3'
miRNA:   3'- gaugGCGGGCGU-GGCGGCCCa--CGC--CG- -5'
23326 3' -64.4 NC_005259.1 + 60279 0.67 0.314404
Target:  5'- -cGCUGCCgGgcggcCAUCGUCGucGGUGCGGCc -3'
miRNA:   3'- gaUGGCGGgC-----GUGGCGGC--CCACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 28303 0.67 0.312268
Target:  5'- gUGCCGCCCuGCGCagcguagaucggugUGCCGuccuugGCGGCg -3'
miRNA:   3'- gAUGGCGGG-CGUG--------------GCGGCcca---CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 30182 0.67 0.307325
Target:  5'- -aGCCGCCCGCAcagcacuaccCCGUC-GGUGCccgccGCg -3'
miRNA:   3'- gaUGGCGGGCGU----------GGCGGcCCACGc----CG- -5'
23326 3' -64.4 NC_005259.1 + 28070 0.67 0.300368
Target:  5'- cCUGCCGCCa-CACgGUgGGGUGCa-- -3'
miRNA:   3'- -GAUGGCGGgcGUGgCGgCCCACGccg -5'
23326 3' -64.4 NC_005259.1 + 68615 0.67 0.300368
Target:  5'- -aACCGCuuGUugGCCaGCCGGGcacccuCGGCg -3'
miRNA:   3'- gaUGGCGggCG--UGG-CGGCCCac----GCCG- -5'
23326 3' -64.4 NC_005259.1 + 8045 0.67 0.300368
Target:  5'- -aACUGUCCGaCACCGCCGGucGCcGCc -3'
miRNA:   3'- gaUGGCGGGC-GUGGCGGCCcaCGcCG- -5'
23326 3' -64.4 NC_005259.1 + 42480 0.67 0.299679
Target:  5'- -gGCCcgGCCCGUAgaGCCGugacccguccggcGGUGUGGCc -3'
miRNA:   3'- gaUGG--CGGGCGUggCGGC-------------CCACGCCG- -5'
23326 3' -64.4 NC_005259.1 + 46556 0.67 0.293533
Target:  5'- -cGCCGaCCGCGCCuaUGGucGCGGCg -3'
miRNA:   3'- gaUGGCgGGCGUGGcgGCCcaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 46889 0.67 0.293533
Target:  5'- -cGCCGCCCGCGaugagcgcCCGCCGagcaGUccGCGuGCg -3'
miRNA:   3'- gaUGGCGGGCGU--------GGCGGCc---CA--CGC-CG- -5'
23326 3' -64.4 NC_005259.1 + 53181 0.67 0.293533
Target:  5'- -cACCG-CCGC-CCGUCGcGGUGUccccGGCg -3'
miRNA:   3'- gaUGGCgGGCGuGGCGGC-CCACG----CCG- -5'
23326 3' -64.4 NC_005259.1 + 5539 0.67 0.293533
Target:  5'- gCUGCucuCGCCCGagGCCGCgUGGG-GUGGUg -3'
miRNA:   3'- -GAUG---GCGGGCg-UGGCG-GCCCaCGCCG- -5'
23326 3' -64.4 NC_005259.1 + 53720 0.67 0.28682
Target:  5'- -cACCGCgCCGCugauggugaugUCGCCGGGUGUccacucGGUg -3'
miRNA:   3'- gaUGGCG-GGCGu----------GGCGGCCCACG------CCG- -5'
23326 3' -64.4 NC_005259.1 + 150 0.67 0.28682
Target:  5'- cCUACUggGCUCGC-CCGgCGGGgucCGGCa -3'
miRNA:   3'- -GAUGG--CGGGCGuGGCgGCCCac-GCCG- -5'
23326 3' -64.4 NC_005259.1 + 23226 0.68 0.279576
Target:  5'- gUACCGUCCGCucgaCGCCaaugccaccucguGGGcgGUGGCc -3'
miRNA:   3'- gAUGGCGGGCGug--GCGG-------------CCCa-CGCCG- -5'
23326 3' -64.4 NC_005259.1 + 23355 0.68 0.2744
Target:  5'- -gGCUGCCUGCgagGCCGCCGaGGcauggaucgucaacaGCGGUa -3'
miRNA:   3'- gaUGGCGGGCG---UGGCGGC-CCa--------------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.