Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23326 | 5' | -56 | NC_005259.1 | + | 42531 | 0.66 | 0.772656 |
Target: 5'- cGGCCccgaugggcaccgaGGugGCGGGcAGCuCGGCGAg- -3' miRNA: 3'- aCUGG--------------UCugCGCCC-UUGcGCUGCUac -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 41905 | 0.66 | 0.745724 |
Target: 5'- gGAUgAG-CGCGGGAGCuCGAaGGUGa -3' miRNA: 3'- aCUGgUCuGCGCCCUUGcGCUgCUAC- -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 68304 | 0.66 | 0.735537 |
Target: 5'- gGAUCGGGCGCguccggcgacGGGAuCuCGAUGAUGg -3' miRNA: 3'- aCUGGUCUGCG----------CCCUuGcGCUGCUAC- -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 64589 | 0.66 | 0.769709 |
Target: 5'- gGGCCAgcacaccaacgagguGACuGaCGGcGAGCGCGACGGg- -3' miRNA: 3'- aCUGGU---------------CUG-C-GCC-CUUGCGCUGCUac -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 15570 | 0.66 | 0.775591 |
Target: 5'- gUGGCCAccCuCGGGGccaGCGCGACGGg- -3' miRNA: 3'- -ACUGGUcuGcGCCCU---UGCGCUGCUac -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 61599 | 0.66 | 0.779484 |
Target: 5'- gGGCCGGugGggucggCGGGGAacagcagaccggcacCGCcGACGGUGa -3' miRNA: 3'- aCUGGUCugC------GCCCUU---------------GCG-CUGCUAC- -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 14561 | 0.67 | 0.683335 |
Target: 5'- aGGCCGa--GCGGGGAC-CGGCGAa- -3' miRNA: 3'- aCUGGUcugCGCCCUUGcGCUGCUac -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 62736 | 0.67 | 0.714877 |
Target: 5'- cGACCGGACcgGCGGcaguACGCGGUGGUa -3' miRNA: 3'- aCUGGUCUG--CGCCcu--UGCGCUGCUAc -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 64902 | 0.67 | 0.704426 |
Target: 5'- gUGACaCGaGCGaCGGcGAGCGUGAgGAUGa -3' miRNA: 3'- -ACUG-GUcUGC-GCC-CUUGCGCUgCUAC- -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 461 | 0.67 | 0.704426 |
Target: 5'- aGGCCAGACcUGGcAACGCGAUGu-- -3' miRNA: 3'- aCUGGUCUGcGCCcUUGCGCUGCuac -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 33581 | 0.67 | 0.703377 |
Target: 5'- uUGACCGcGuCGCGGGccaccgaGGCGCGGuCGAg- -3' miRNA: 3'- -ACUGGU-CuGCGCCC-------UUGCGCU-GCUac -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 35664 | 0.67 | 0.693909 |
Target: 5'- gUGGCCAG-CGCGGuGGugGUGcacaGCGAc- -3' miRNA: 3'- -ACUGGUCuGCGCC-CUugCGC----UGCUac -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 66935 | 0.68 | 0.619262 |
Target: 5'- cGACCGGGgugaGCGGGAcAC-CGGCGAg- -3' miRNA: 3'- aCUGGUCUg---CGCCCU-UGcGCUGCUac -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 30489 | 0.68 | 0.640675 |
Target: 5'- aGGCCAGACcCGGcGAgaccuuGCGCGAUGuguUGa -3' miRNA: 3'- aCUGGUCUGcGCC-CU------UGCGCUGCu--AC- -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 11596 | 0.69 | 0.566064 |
Target: 5'- uUGGCCGGAguuUGCuGGAACGCu-CGAUGu -3' miRNA: 3'- -ACUGGUCU---GCGcCCUUGCGcuGCUAC- -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 29103 | 0.7 | 0.534689 |
Target: 5'- gUGAgCuGAUGCGGacccugcugguGAGCGCGGCGGUa -3' miRNA: 3'- -ACUgGuCUGCGCC-----------CUUGCGCUGCUAc -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 45628 | 0.71 | 0.474001 |
Target: 5'- -cGCCGGGC-CGGGcAGCGCGcCGGUGc -3' miRNA: 3'- acUGGUCUGcGCCC-UUGCGCuGCUAC- -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 5553 | 0.71 | 0.464217 |
Target: 5'- aGGCC--GCGUGGGGugGUGACGGc- -3' miRNA: 3'- aCUGGucUGCGCCCUugCGCUGCUac -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 68696 | 0.71 | 0.454539 |
Target: 5'- aUGAUC-GAgGCGGGcAGCGCGuCGGUGc -3' miRNA: 3'- -ACUGGuCUgCGCCC-UUGCGCuGCUAC- -5' |
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23326 | 5' | -56 | NC_005259.1 | + | 53043 | 0.71 | 0.434578 |
Target: 5'- gUGACCu--CGCGGGAaauugcuGCGUGACGGg- -3' miRNA: 3'- -ACUGGucuGCGCCCU-------UGCGCUGCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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