Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23326 | 5' | -56 | NC_005259.1 | + | 33881 | 0.73 | 0.355177 |
Target: 5'- gUGAgCAcACGCGGGAaccacccGCGCGACGGg- -3' miRNA: 3'- -ACUgGUcUGCGCCCU-------UGCGCUGCUac -5' |
|||||||
23326 | 5' | -56 | NC_005259.1 | + | 23282 | 0.73 | 0.353532 |
Target: 5'- aGACCGGGCGCggugguuggguaucGGGGuccgGCGCGGuCGGUGu -3' miRNA: 3'- aCUGGUCUGCG--------------CCCU----UGCGCU-GCUAC- -5' |
|||||||
23326 | 5' | -56 | NC_005259.1 | + | 53670 | 0.74 | 0.31645 |
Target: 5'- aGGCCccACGCGGGcauCGCGAUGGUGc -3' miRNA: 3'- aCUGGucUGCGCCCuu-GCGCUGCUAC- -5' |
|||||||
23326 | 5' | -56 | NC_005259.1 | + | 9856 | 1.08 | 0.001507 |
Target: 5'- uUGACCAGACGCGGGAACGCGACGAUGu -3' miRNA: 3'- -ACUGGUCUGCGCCCUUGCGCUGCUAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home