miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23327 3' -61.1 NC_005259.1 + 44721 0.66 0.464022
Target:  5'- ---uGCAACGCACccggcaGCGCGCCCuCGa-- -3'
miRNA:   3'- cucuCGUUGCGUG------CGCGCGGG-GCcau -5'
23327 3' -61.1 NC_005259.1 + 66099 0.67 0.408478
Target:  5'- uGGuGCAGCGCACGCGCGaCUUCu--- -3'
miRNA:   3'- cUCuCGUUGCGUGCGCGC-GGGGccau -5'
23327 3' -61.1 NC_005259.1 + 59031 0.67 0.399631
Target:  5'- aGAGAGCAgauccuugagGCGC-UGCGCGUCCUcaGGg- -3'
miRNA:   3'- -CUCUCGU----------UGCGuGCGCGCGGGG--CCau -5'
23327 3' -61.1 NC_005259.1 + 24575 0.67 0.390907
Target:  5'- -uGGGCAcCGCACGUGCucaacGCUaCCGGUGa -3'
miRNA:   3'- cuCUCGUuGCGUGCGCG-----CGG-GGCCAU- -5'
23327 3' -61.1 NC_005259.1 + 1560 0.67 0.382308
Target:  5'- cGGGGCGgugACGCugugaGCGCGCCCCa--- -3'
miRNA:   3'- cUCUCGU---UGCGug---CGCGCGGGGccau -5'
23327 3' -61.1 NC_005259.1 + 35315 0.68 0.349194
Target:  5'- cGAGGGCGGugUGUACGCGa-CCCCGcGUAg -3'
miRNA:   3'- -CUCUCGUU--GCGUGCGCgcGGGGC-CAU- -5'
23327 3' -61.1 NC_005259.1 + 6901 0.68 0.33342
Target:  5'- ---cGCAACGCACGCGCcGCCgCCa--- -3'
miRNA:   3'- cucuCGUUGCGUGCGCG-CGG-GGccau -5'
23327 3' -61.1 NC_005259.1 + 5508 0.68 0.318175
Target:  5'- -cGAGCuACGCGCGcCGCGCCCg---- -3'
miRNA:   3'- cuCUCGuUGCGUGC-GCGCGGGgccau -5'
23327 3' -61.1 NC_005259.1 + 48063 0.68 0.318175
Target:  5'- -cGGGUAGCGC-CGcCGCGCCCUGa-- -3'
miRNA:   3'- cuCUCGUUGCGuGC-GCGCGGGGCcau -5'
23327 3' -61.1 NC_005259.1 + 9103 0.68 0.318175
Target:  5'- cGAGGGCGGgGaACucaaucccaCGCGCCCCGGUAc -3'
miRNA:   3'- -CUCUCGUUgCgUGc--------GCGCGGGGCCAU- -5'
23327 3' -61.1 NC_005259.1 + 4414 0.69 0.310751
Target:  5'- cGAGGGCcGC-CAcCGCGCGCCCgaGGUc -3'
miRNA:   3'- -CUCUCGuUGcGU-GCGCGCGGGg-CCAu -5'
23327 3' -61.1 NC_005259.1 + 32181 0.71 0.226105
Target:  5'- -uGAGCu-CGC-UGCGCGCCUCGGUc -3'
miRNA:   3'- cuCUCGuuGCGuGCGCGCGGGGCCAu -5'
23327 3' -61.1 NC_005259.1 + 40668 0.72 0.170524
Target:  5'- -cGAGCAGCGCGa--GCGCCuuGGUGc -3'
miRNA:   3'- cuCUCGUUGCGUgcgCGCGGggCCAU- -5'
23327 3' -61.1 NC_005259.1 + 4514 0.74 0.130937
Target:  5'- cGGGAGUGGCGC-UGCGCGgcaCCCCGGUc -3'
miRNA:   3'- -CUCUCGUUGCGuGCGCGC---GGGGCCAu -5'
23327 3' -61.1 NC_005259.1 + 9388 1.05 0.000586
Target:  5'- gGAGAGCAACGCACGCGCGCCCCGGUAc -3'
miRNA:   3'- -CUCUCGUUGCGUGCGCGCGGGGCCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.