miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23327 5' -54.7 NC_005259.1 + 32569 0.67 0.760203
Target:  5'- aGCGCgGggauagcGUUGGGCAGCgguuUACGCGCg -3'
miRNA:   3'- gUGUGgCaa-----CAGCUCGUCG----GUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 5492 0.67 0.760203
Target:  5'- aGCGCCGag--CGAGgaucgAGCUACGCGCg -3'
miRNA:   3'- gUGUGGCaacaGCUCg----UCGGUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 41739 0.67 0.759191
Target:  5'- gACACCGcc-UCGAcacgcucgaccucGCAGCCuuGCGCg -3'
miRNA:   3'- gUGUGGCaacAGCU-------------CGUCGGugUGCG- -5'
23327 5' -54.7 NC_005259.1 + 63398 0.67 0.754111
Target:  5'- cCACGCCGaccaaugGUugcccuugcucaugcCGAGCAGCCGCuCGg -3'
miRNA:   3'- -GUGUGGCaa-----CA---------------GCUCGUCGGUGuGCg -5'
23327 5' -54.7 NC_005259.1 + 63592 0.67 0.750025
Target:  5'- cCugGCUGUUcUCGuccuccauGGCGGCCACcgACGCc -3'
miRNA:   3'- -GugUGGCAAcAGC--------UCGUCGGUG--UGCG- -5'
23327 5' -54.7 NC_005259.1 + 60602 0.67 0.750025
Target:  5'- --uGCCGUcaUCGAGCAGC-ACAgGCg -3'
miRNA:   3'- gugUGGCAacAGCUCGUCGgUGUgCG- -5'
23327 5' -54.7 NC_005259.1 + 44671 0.67 0.750025
Target:  5'- cCACACCGUUGggcagCGuGGCccgcauauGGCC-CGCGUc -3'
miRNA:   3'- -GUGUGGCAACa----GC-UCG--------UCGGuGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 51486 0.67 0.749
Target:  5'- cCACACCGccggggauagGUCGAcGCcGCCgaucucgACGCGCg -3'
miRNA:   3'- -GUGUGGCaa--------CAGCU-CGuCGG-------UGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 13417 0.67 0.73973
Target:  5'- cCugGCCGggGUCGccGCcggGGCCGCGCuagGCg -3'
miRNA:   3'- -GugUGGCaaCAGCu-CG---UCGGUGUG---CG- -5'
23327 5' -54.7 NC_005259.1 + 4428 0.67 0.729329
Target:  5'- gCGCGCCcgagGUCGAGCcGCC-CGUGCg -3'
miRNA:   3'- -GUGUGGcaa-CAGCUCGuCGGuGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 11224 0.67 0.729329
Target:  5'- aCACGCCGcaguccucggGcUCGGGCA-UCGCGCGCa -3'
miRNA:   3'- -GUGUGGCaa--------C-AGCUCGUcGGUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 40890 0.67 0.729329
Target:  5'- -cCACCGUggcgggGUCG-GCAGCguccCACGCu -3'
miRNA:   3'- guGUGGCAa-----CAGCuCGUCGgu--GUGCG- -5'
23327 5' -54.7 NC_005259.1 + 13632 0.68 0.718833
Target:  5'- gCGgGCCGcucaacGUCGA-CGGCUACGCGCc -3'
miRNA:   3'- -GUgUGGCaa----CAGCUcGUCGGUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 66089 0.68 0.708253
Target:  5'- gCACGCC--UGaUGGuGCAGCgCACGCGCg -3'
miRNA:   3'- -GUGUGGcaACaGCU-CGUCG-GUGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 19303 0.68 0.697601
Target:  5'- aACGCCGagGcacUCGAGgaAGCCAuCGCGCu -3'
miRNA:   3'- gUGUGGCaaC---AGCUCg-UCGGU-GUGCG- -5'
23327 5' -54.7 NC_005259.1 + 40545 0.68 0.697601
Target:  5'- --uGCCGUgguaGUCGAcGCGcGCC-CGCGCg -3'
miRNA:   3'- gugUGGCAa---CAGCU-CGU-CGGuGUGCG- -5'
23327 5' -54.7 NC_005259.1 + 60292 0.68 0.697601
Target:  5'- -cCAUCGUcGUCGGuGCGGCCACggACGg -3'
miRNA:   3'- guGUGGCAaCAGCU-CGUCGGUG--UGCg -5'
23327 5' -54.7 NC_005259.1 + 7860 0.68 0.691179
Target:  5'- cCGCGCCGaccccggugGcccgagugcuuggacUCGGGCAGCCGCcgauaGCGCa -3'
miRNA:   3'- -GUGUGGCaa-------C---------------AGCUCGUCGGUG-----UGCG- -5'
23327 5' -54.7 NC_005259.1 + 51134 0.68 0.686887
Target:  5'- -uCACCGUcg--GGGCGGCCAUgaGCGCg -3'
miRNA:   3'- guGUGGCAacagCUCGUCGGUG--UGCG- -5'
23327 5' -54.7 NC_005259.1 + 37357 0.68 0.686887
Target:  5'- --uGCCGcUGUgCGAGUAGCU-CACGCc -3'
miRNA:   3'- gugUGGCaACA-GCUCGUCGGuGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.