Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23329 | 3' | -53.1 | NC_005259.1 | + | 62938 | 0.66 | 0.918342 |
Target: 5'- -gCGgcUCGCGcuGCUGcCgGGCACCGc -3' miRNA: 3'- ggGCaaAGCGCu-UGACaGgCUGUGGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 1893 | 0.67 | 0.84495 |
Target: 5'- gCCGagaucgCGCGAGCUG-CCGaggaagcGCGCCGc -3' miRNA: 3'- gGGCaaa---GCGCUUGACaGGC-------UGUGGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 26123 | 0.67 | 0.845794 |
Target: 5'- gCCGccggUCGCcg---GUCCGACGCCGc -3' miRNA: 3'- gGGCaa--AGCGcuugaCAGGCUGUGGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 21696 | 0.67 | 0.862232 |
Target: 5'- aUCCGUUUCGaGGACggGUCaGACgACCGc -3' miRNA: 3'- -GGGCAAAGCgCUUGa-CAGgCUG-UGGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 30244 | 0.67 | 0.87775 |
Target: 5'- aCCCGUga-GCGGAUcugGUUCGACugacaugcACCGg -3' miRNA: 3'- -GGGCAaagCGCUUGa--CAGGCUG--------UGGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 36131 | 0.67 | 0.885149 |
Target: 5'- --aGUUgggcCGcCGGGCUGUCCGuCGCCa -3' miRNA: 3'- gggCAAa---GC-GCUUGACAGGCuGUGGc -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 13541 | 0.66 | 0.8923 |
Target: 5'- aCCaagcagUUCGCGAugUGgcccgCCGACcCCGc -3' miRNA: 3'- -GGgca---AAGCGCUugACa----GGCUGuGGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 10493 | 0.66 | 0.899198 |
Target: 5'- gUCGUggUUGUugGggUUGUCCGGCACgGg -3' miRNA: 3'- gGGCAa-AGCG--CuuGACAGGCUGUGgC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 60705 | 0.66 | 0.899198 |
Target: 5'- aCCaaagcaCGCGAugUGUCCGAauauCCGg -3' miRNA: 3'- -GGgcaaa-GCGCUugACAGGCUgu--GGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 11861 | 0.68 | 0.83725 |
Target: 5'- aCCCGUcg-GCGAACgUGaCCGccGCACCGu -3' miRNA: 3'- -GGGCAaagCGCUUG-ACaGGC--UGUGGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 46841 | 0.68 | 0.81955 |
Target: 5'- cCCCG----GCGAGCUGcCCGAguCCGc -3' miRNA: 3'- -GGGCaaagCGCUUGACaGGCUguGGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 6667 | 0.68 | 0.810413 |
Target: 5'- gUCCGUgacgCGCGAGCUGcCCGcuuCCa -3' miRNA: 3'- -GGGCAaa--GCGCUUGACaGGCuguGGc -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 26386 | 0.76 | 0.402895 |
Target: 5'- gCCUGUUgcUCGCGAu---UCCGACGCCGg -3' miRNA: 3'- -GGGCAA--AGCGCUugacAGGCUGUGGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 29846 | 0.74 | 0.488848 |
Target: 5'- aUCCG-UUCGCucGCUGUCgGGCAUCGa -3' miRNA: 3'- -GGGCaAAGCGcuUGACAGgCUGUGGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 23100 | 0.71 | 0.65659 |
Target: 5'- aCCGgucgagauggUCGUGAuugaucuGCUGUCCGGCAgCGa -3' miRNA: 3'- gGGCaa--------AGCGCU-------UGACAGGCUGUgGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 14336 | 0.71 | 0.657664 |
Target: 5'- gCCCGcg-UGCGGGCcG-CCGACGCCa -3' miRNA: 3'- -GGGCaaaGCGCUUGaCaGGCUGUGGc -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 30743 | 0.71 | 0.668393 |
Target: 5'- aCCUGagagUUCaUGAACUGcaugCCGACGCCGg -3' miRNA: 3'- -GGGCa---AAGcGCUUGACa---GGCUGUGGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 35843 | 0.71 | 0.67909 |
Target: 5'- aCCGcc-CGCGAGCacagGUCCGcCGCCGc -3' miRNA: 3'- gGGCaaaGCGCUUGa---CAGGCuGUGGC- -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 20816 | 0.69 | 0.752182 |
Target: 5'- uCCCG--UCGCGGcgcaccaagGCUgaccgugaGUCCGACGCCu -3' miRNA: 3'- -GGGCaaAGCGCU---------UGA--------CAGGCUGUGGc -5' |
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23329 | 3' | -53.1 | NC_005259.1 | + | 44249 | 0.68 | 0.801097 |
Target: 5'- gCCCGcg-CGCGAGaaGUCggCGACAUCGa -3' miRNA: 3'- -GGGCaaaGCGCUUgaCAG--GCUGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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