miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23329 5' -56.3 NC_005259.1 + 32622 0.66 0.757501
Target:  5'- cUCGACAUCGAGcucUCGguacGCCGCaUUGg -3'
miRNA:   3'- cGGCUGUAGCUCu--AGCa---CGGCGcGAC- -5'
23329 5' -56.3 NC_005259.1 + 22139 0.66 0.757501
Target:  5'- aGCC-ACGUCGGcAUCGUGC-GCGCc- -3'
miRNA:   3'- -CGGcUGUAGCUcUAGCACGgCGCGac -5'
23329 5' -56.3 NC_005259.1 + 58788 0.66 0.747449
Target:  5'- cGCCGG--UCGAGGcggugauugccUCGgcggGCuCGCGCUGc -3'
miRNA:   3'- -CGGCUguAGCUCU-----------AGCa---CG-GCGCGAC- -5'
23329 5' -56.3 NC_005259.1 + 39929 0.66 0.747449
Target:  5'- gGCCG-CGUCGAGGUCGU-CCuuGgUGa -3'
miRNA:   3'- -CGGCuGUAGCUCUAGCAcGGcgCgAC- -5'
23329 5' -56.3 NC_005259.1 + 6915 0.66 0.747449
Target:  5'- cGCCGcCAUCGAGAacCGccGCCGCcUUGa -3'
miRNA:   3'- -CGGCuGUAGCUCUa-GCa-CGGCGcGAC- -5'
23329 5' -56.3 NC_005259.1 + 38163 0.66 0.737287
Target:  5'- cGCCGAUGaCGGuGAUCgGUGCCucguCGCUGu -3'
miRNA:   3'- -CGGCUGUaGCU-CUAG-CACGGc---GCGAC- -5'
23329 5' -56.3 NC_005259.1 + 10774 0.66 0.737287
Target:  5'- gGCgGGuCAUCGAGGUgG-GCCGCGa-- -3'
miRNA:   3'- -CGgCU-GUAGCUCUAgCaCGGCGCgac -5'
23329 5' -56.3 NC_005259.1 + 2738 0.66 0.727024
Target:  5'- aCCGAUGcCGAGGUCGccGUCGUGCa- -3'
miRNA:   3'- cGGCUGUaGCUCUAGCa-CGGCGCGac -5'
23329 5' -56.3 NC_005259.1 + 28957 0.66 0.727024
Target:  5'- cGCCG-CAUcgcCGAGGUCGgugccgagGCCGCGa-- -3'
miRNA:   3'- -CGGCuGUA---GCUCUAGCa-------CGGCGCgac -5'
23329 5' -56.3 NC_005259.1 + 5051 0.66 0.727024
Target:  5'- cGuuGAUcacgGUCGAGAUCGUggGCCGgGUc- -3'
miRNA:   3'- -CggCUG----UAGCUCUAGCA--CGGCgCGac -5'
23329 5' -56.3 NC_005259.1 + 57303 0.66 0.725993
Target:  5'- uGCaCGACAUCGAGcaccggcgguGUCgGUGUggucaugUGCGCUGu -3'
miRNA:   3'- -CG-GCUGUAGCUC----------UAG-CACG-------GCGCGAC- -5'
23329 5' -56.3 NC_005259.1 + 55769 0.66 0.716673
Target:  5'- aGCCGcguacGCGUCGAGcUCG-GCC-CGCUu -3'
miRNA:   3'- -CGGC-----UGUAGCUCuAGCaCGGcGCGAc -5'
23329 5' -56.3 NC_005259.1 + 49883 0.66 0.706241
Target:  5'- cGCCGAguUgCGcaugaAGGUCGUGCCcGCGUa- -3'
miRNA:   3'- -CGGCUguA-GC-----UCUAGCACGG-CGCGac -5'
23329 5' -56.3 NC_005259.1 + 31513 0.66 0.706241
Target:  5'- cGCCGGacuugcuugAUCGGGGUgGUGCCGUGa-- -3'
miRNA:   3'- -CGGCUg--------UAGCUCUAgCACGGCGCgac -5'
23329 5' -56.3 NC_005259.1 + 6433 0.66 0.706241
Target:  5'- cGCCGAUGUCGGcacc--GUCGCGCUGa -3'
miRNA:   3'- -CGGCUGUAGCUcuagcaCGGCGCGAC- -5'
23329 5' -56.3 NC_005259.1 + 27663 0.67 0.695742
Target:  5'- uGUCGACAUCGAGccauuUGuuGCGCg- -3'
miRNA:   3'- -CGGCUGUAGCUCuagc-ACggCGCGac -5'
23329 5' -56.3 NC_005259.1 + 20272 0.67 0.685185
Target:  5'- gGCCGAU----GGAUCGUGgaCGCGCUa -3'
miRNA:   3'- -CGGCUGuagcUCUAGCACg-GCGCGAc -5'
23329 5' -56.3 NC_005259.1 + 42603 0.67 0.685185
Target:  5'- aGUCGACAUCGGcGGUCaugagcccgaUGUCGCGCg- -3'
miRNA:   3'- -CGGCUGUAGCU-CUAGc---------ACGGCGCGac -5'
23329 5' -56.3 NC_005259.1 + 38089 0.67 0.674579
Target:  5'- gGCCcACGUCGAGAUCcgacccGUCGCGUa- -3'
miRNA:   3'- -CGGcUGUAGCUCUAGca----CGGCGCGac -5'
23329 5' -56.3 NC_005259.1 + 68290 0.67 0.674579
Target:  5'- cGCCccauACAUCGGGAUCG-GgCGCGUc- -3'
miRNA:   3'- -CGGc---UGUAGCUCUAGCaCgGCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.