Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23329 | 5' | -56.3 | NC_005259.1 | + | 2738 | 0.66 | 0.727024 |
Target: 5'- aCCGAUGcCGAGGUCGccGUCGUGCa- -3' miRNA: 3'- cGGCUGUaGCUCUAGCa-CGGCGCGac -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 5051 | 0.66 | 0.727024 |
Target: 5'- cGuuGAUcacgGUCGAGAUCGUggGCCGgGUc- -3' miRNA: 3'- -CggCUG----UAGCUCUAGCA--CGGCgCGac -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 5421 | 0.72 | 0.400634 |
Target: 5'- gGCCGccACGUCGAGGUCuGcGCC-CGCUGc -3' miRNA: 3'- -CGGC--UGUAGCUCUAG-CaCGGcGCGAC- -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 5566 | 0.78 | 0.160118 |
Target: 5'- uGgUGACggCGAGAcCGUGCCGUGCUGg -3' miRNA: 3'- -CgGCUGuaGCUCUaGCACGGCGCGAC- -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 5629 | 0.69 | 0.540754 |
Target: 5'- aGCCGAC--CG-GAUCGUGCCcggcgaggacggcggGCGCUa -3' miRNA: 3'- -CGGCUGuaGCuCUAGCACGG---------------CGCGAc -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 5894 | 0.77 | 0.19765 |
Target: 5'- uGCCGucgaccACGUCGAGGUCGaggUGCUGCGCa- -3' miRNA: 3'- -CGGC------UGUAGCUCUAGC---ACGGCGCGac -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 6433 | 0.66 | 0.706241 |
Target: 5'- cGCCGAUGUCGGcacc--GUCGCGCUGa -3' miRNA: 3'- -CGGCUGUAGCUcuagcaCGGCGCGAC- -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 6915 | 0.66 | 0.747449 |
Target: 5'- cGCCGcCAUCGAGAacCGccGCCGCcUUGa -3' miRNA: 3'- -CGGCuGUAGCUCUa-GCa-CGGCGcGAC- -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 7333 | 0.68 | 0.621176 |
Target: 5'- cGCCGAguaCGUCGAGGccggacagacguUCGUGCUGUGg-- -3' miRNA: 3'- -CGGCU---GUAGCUCU------------AGCACGGCGCgac -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 8068 | 1.11 | 0.000803 |
Target: 5'- cGCCGACAUCGAGAUCGUGCCGCGCUGg -3' miRNA: 3'- -CGGCUGUAGCUCUAGCACGGCGCGAC- -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 9179 | 0.69 | 0.547002 |
Target: 5'- aGCCGAUgcaaugGUCGAGGUCGUcauacgggGCCGgaucgagcacCGCUGc -3' miRNA: 3'- -CGGCUG------UAGCUCUAGCA--------CGGC----------GCGAC- -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 10774 | 0.66 | 0.737287 |
Target: 5'- gGCgGGuCAUCGAGGUgG-GCCGCGa-- -3' miRNA: 3'- -CGgCU-GUAGCUCUAgCaCGGCGCgac -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 13420 | 0.68 | 0.642574 |
Target: 5'- gGCCGGgGUCGccgcCGggGCCGCGCUa -3' miRNA: 3'- -CGGCUgUAGCucuaGCa-CGGCGCGAc -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 17348 | 0.77 | 0.187603 |
Target: 5'- cGUCGcCGUCGAGGUCGgcgGCUcgGCGCUGg -3' miRNA: 3'- -CGGCuGUAGCUCUAGCa--CGG--CGCGAC- -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 20272 | 0.67 | 0.685185 |
Target: 5'- gGCCGAU----GGAUCGUGgaCGCGCUa -3' miRNA: 3'- -CGGCUGuagcUCUAGCACg-GCGCGAc -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 22139 | 0.66 | 0.757501 |
Target: 5'- aGCC-ACGUCGGcAUCGUGC-GCGCc- -3' miRNA: 3'- -CGGcUGUAGCUcUAGCACGgCGCGac -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 24285 | 0.71 | 0.418732 |
Target: 5'- cGCuCGACcUCGGGAUgGUGCUGCuGCg- -3' miRNA: 3'- -CG-GCUGuAGCUCUAgCACGGCG-CGac -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 27663 | 0.67 | 0.695742 |
Target: 5'- uGUCGACAUCGAGccauuUGuuGCGCg- -3' miRNA: 3'- -CGGCUGUAGCUCuagc-ACggCGCGac -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 28005 | 0.68 | 0.620107 |
Target: 5'- uGCCGGgG-CGGGGUCGccgggguUGCgCGCGUUGg -3' miRNA: 3'- -CGGCUgUaGCUCUAGC-------ACG-GCGCGAC- -5' |
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23329 | 5' | -56.3 | NC_005259.1 | + | 28957 | 0.66 | 0.727024 |
Target: 5'- cGCCG-CAUcgcCGAGGUCGgugccgagGCCGCGa-- -3' miRNA: 3'- -CGGCuGUA---GCUCUAGCa-------CGGCGCgac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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