miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23329 5' -56.3 NC_005259.1 + 32622 0.66 0.757501
Target:  5'- cUCGACAUCGAGcucUCGguacGCCGCaUUGg -3'
miRNA:   3'- cGGCUGUAGCUCu--AGCa---CGGCGcGAC- -5'
23329 5' -56.3 NC_005259.1 + 35619 0.69 0.547002
Target:  5'- cGCUG-CGUCGAGuaguUCGggccGCCGcCGCUGc -3'
miRNA:   3'- -CGGCuGUAGCUCu---AGCa---CGGC-GCGAC- -5'
23329 5' -56.3 NC_005259.1 + 56795 0.68 0.588106
Target:  5'- uGCCGAUgaacagAUCGGGGUCGgugGCCacccauuGCGCg- -3'
miRNA:   3'- -CGGCUG------UAGCUCUAGCa--CGG-------CGCGac -5'
23329 5' -56.3 NC_005259.1 + 55888 0.68 0.610487
Target:  5'- cCCGACcUCgGGGGUCGcGCCGggguCGCUGg -3'
miRNA:   3'- cGGCUGuAG-CUCUAGCaCGGC----GCGAC- -5'
23329 5' -56.3 NC_005259.1 + 28005 0.68 0.620107
Target:  5'- uGCCGGgG-CGGGGUCGccgggguUGCgCGCGUUGg -3'
miRNA:   3'- -CGGCUgUaGCUCUAGC-------ACG-GCGCGAC- -5'
23329 5' -56.3 NC_005259.1 + 55562 0.68 0.620107
Target:  5'- uGCCGAaagCGAGcaggaacAUCaccGCCGCGCUGg -3'
miRNA:   3'- -CGGCUguaGCUC-------UAGca-CGGCGCGAC- -5'
23329 5' -56.3 NC_005259.1 + 7333 0.68 0.621176
Target:  5'- cGCCGAguaCGUCGAGGccggacagacguUCGUGCUGUGg-- -3'
miRNA:   3'- -CGGCU---GUAGCUCU------------AGCACGGCGCgac -5'
23329 5' -56.3 NC_005259.1 + 13420 0.68 0.642574
Target:  5'- gGCCGGgGUCGccgcCGggGCCGCGCUa -3'
miRNA:   3'- -CGGCUgUAGCucuaGCa-CGGCGCGAc -5'
23329 5' -56.3 NC_005259.1 + 36817 0.67 0.673516
Target:  5'- aCCGGCGcggUGAGAcccacggUUGUGCaCGUGCUGa -3'
miRNA:   3'- cGGCUGUa--GCUCU-------AGCACG-GCGCGAC- -5'
23329 5' -56.3 NC_005259.1 + 9179 0.69 0.547002
Target:  5'- aGCCGAUgcaaugGUCGAGGUCGUcauacgggGCCGgaucgagcacCGCUGc -3'
miRNA:   3'- -CGGCUG------UAGCUCUAGCA--------CGGC----------GCGAC- -5'
23329 5' -56.3 NC_005259.1 + 67413 0.69 0.547002
Target:  5'- gGCCGACAccaUCGGG---GUGCCGgGCUc -3'
miRNA:   3'- -CGGCUGU---AGCUCuagCACGGCgCGAc -5'
23329 5' -56.3 NC_005259.1 + 5629 0.69 0.540754
Target:  5'- aGCCGAC--CG-GAUCGUGCCcggcgaggacggcggGCGCUa -3'
miRNA:   3'- -CGGCUGuaGCuCUAGCACGG---------------CGCGAc -5'
23329 5' -56.3 NC_005259.1 + 5566 0.78 0.160118
Target:  5'- uGgUGACggCGAGAcCGUGCCGUGCUGg -3'
miRNA:   3'- -CgGCUGuaGCUCUaGCACGGCGCGAC- -5'
23329 5' -56.3 NC_005259.1 + 17348 0.77 0.187603
Target:  5'- cGUCGcCGUCGAGGUCGgcgGCUcgGCGCUGg -3'
miRNA:   3'- -CGGCuGUAGCUCUAGCa--CGG--CGCGAC- -5'
23329 5' -56.3 NC_005259.1 + 5894 0.77 0.19765
Target:  5'- uGCCGucgaccACGUCGAGGUCGaggUGCUGCGCa- -3'
miRNA:   3'- -CGGC------UGUAGCUCUAGC---ACGGCGCGac -5'
23329 5' -56.3 NC_005259.1 + 5421 0.72 0.400634
Target:  5'- gGCCGccACGUCGAGGUCuGcGCC-CGCUGc -3'
miRNA:   3'- -CGGC--UGUAGCUCUAG-CaCGGcGCGAC- -5'
23329 5' -56.3 NC_005259.1 + 24285 0.71 0.418732
Target:  5'- cGCuCGACcUCGGGAUgGUGCUGCuGCg- -3'
miRNA:   3'- -CG-GCUGuAGCUCUAgCACGGCG-CGac -5'
23329 5' -56.3 NC_005259.1 + 56241 0.71 0.466061
Target:  5'- cGCCGACcacGUUGGGAUCGgcgGCCuugaGCGCc- -3'
miRNA:   3'- -CGGCUG---UAGCUCUAGCa--CGG----CGCGac -5'
23329 5' -56.3 NC_005259.1 + 60762 0.7 0.475858
Target:  5'- aGUCGGCucggCGAGGUUGgGCUGCGCg- -3'
miRNA:   3'- -CGGCUGua--GCUCUAGCaCGGCGCGac -5'
23329 5' -56.3 NC_005259.1 + 49343 0.7 0.495752
Target:  5'- -aCGACucaggCGAGAg-GUGCCGCGCg- -3'
miRNA:   3'- cgGCUGua---GCUCUagCACGGCGCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.