miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23330 3' -53 NC_005259.1 + 60174 0.66 0.885894
Target:  5'- aCGGGCGGcgaacgccuGCUCGACcgACCGGGc -3'
miRNA:   3'- aGCCUGUUuac------CGAGCUGa-UGGCCUa -5'
23330 3' -53 NC_005259.1 + 62930 0.66 0.854084
Target:  5'- cUCGGuuugc-GGCUCGcgcuGCUGCCGGGc -3'
miRNA:   3'- -AGCCuguuuaCCGAGC----UGAUGGCCUa -5'
23330 3' -53 NC_005259.1 + 68842 0.66 0.852391
Target:  5'- gUCGGugAGGUgGGCcaucaugUCGACUugcccgcGCCGGGc -3'
miRNA:   3'- -AGCCugUUUA-CCG-------AGCUGA-------UGGCCUa -5'
23330 3' -53 NC_005259.1 + 59477 0.67 0.836742
Target:  5'- gUUGGGCAgGAUGGCcCGAUaGCCGaGAg -3'
miRNA:   3'- -AGCCUGU-UUACCGaGCUGaUGGC-CUa -5'
23330 3' -53 NC_005259.1 + 18149 0.67 0.818533
Target:  5'- aUGGACGAGaucgGGCU-GAC-GCCGGAUc -3'
miRNA:   3'- aGCCUGUUUa---CCGAgCUGaUGGCCUA- -5'
23330 3' -53 NC_005259.1 + 30252 0.67 0.798563
Target:  5'- gCGGAUc--UGGUUCGACUgacaugcACCGGGc -3'
miRNA:   3'- aGCCUGuuuACCGAGCUGA-------UGGCCUa -5'
23330 3' -53 NC_005259.1 + 34188 0.68 0.749136
Target:  5'- cCGGGC-AGUGGCUCGGCaa-CGGu- -3'
miRNA:   3'- aGCCUGuUUACCGAGCUGaugGCCua -5'
23330 3' -53 NC_005259.1 + 4617 0.69 0.73865
Target:  5'- gUCGGGCcGGUGGCgCGAgUuCUGGAUa -3'
miRNA:   3'- -AGCCUGuUUACCGaGCUgAuGGCCUA- -5'
23330 3' -53 NC_005259.1 + 58562 0.72 0.53998
Target:  5'- cUCGGGCGGuugGGCcggaucgcggcgCGGCUGCCGGGc -3'
miRNA:   3'- -AGCCUGUUua-CCGa-----------GCUGAUGGCCUa -5'
23330 3' -53 NC_005259.1 + 10344 0.74 0.448997
Target:  5'- cUCGGcgGCAGcgGGCUCGAC-AUCGGGc -3'
miRNA:   3'- -AGCC--UGUUuaCCGAGCUGaUGGCCUa -5'
23330 3' -53 NC_005259.1 + 6585 1.06 0.003591
Target:  5'- cUCGGACAAAUGGCUCGACUACCGGAUc -3'
miRNA:   3'- -AGCCUGUUUACCGAGCUGAUGGCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.