miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23332 3' -54.4 NC_005259.1 + 49400 0.65 0.840798
Target:  5'- cGAGCGagacguacuugcucGAUGc-CAGCGAgaaACCGGCGAg -3'
miRNA:   3'- -CUCGC--------------CUACaaGUCGCUg--UGGCUGCU- -5'
23332 3' -54.4 NC_005259.1 + 44254 0.66 0.834691
Target:  5'- -cGCGcGAgaagUCGGCGACAUCGAggcCGAa -3'
miRNA:   3'- cuCGC-CUaca-AGUCGCUGUGGCU---GCU- -5'
23332 3' -54.4 NC_005259.1 + 51347 0.66 0.834691
Target:  5'- uGAGCucGGAuaUGccCGGUGGCACCGGCa- -3'
miRNA:   3'- -CUCG--CCU--ACaaGUCGCUGUGGCUGcu -5'
23332 3' -54.4 NC_005259.1 + 50985 0.66 0.834691
Target:  5'- cGAGCGG-UGUcgAGU--CACCGGCGAa -3'
miRNA:   3'- -CUCGCCuACAagUCGcuGUGGCUGCU- -5'
23332 3' -54.4 NC_005259.1 + 26030 0.66 0.834691
Target:  5'- aAGCGGGuUGgcCAGCaGCGCCGcCGGg -3'
miRNA:   3'- cUCGCCU-ACaaGUCGcUGUGGCuGCU- -5'
23332 3' -54.4 NC_005259.1 + 18330 0.66 0.797939
Target:  5'- aGGcCGGugcGUUCguGGuCGACGCCGACGGc -3'
miRNA:   3'- cUC-GCCua-CAAG--UC-GCUGUGGCUGCU- -5'
23332 3' -54.4 NC_005259.1 + 67598 0.67 0.758485
Target:  5'- cGGGCGcGAgacgUGUUCgAGC--CACCGACGAa -3'
miRNA:   3'- -CUCGC-CU----ACAAG-UCGcuGUGGCUGCU- -5'
23332 3' -54.4 NC_005259.1 + 58611 0.67 0.747252
Target:  5'- cGAGCGccuggcuGAUG-UCGGCGAaACCGACa- -3'
miRNA:   3'- -CUCGC-------CUACaAGUCGCUgUGGCUGcu -5'
23332 3' -54.4 NC_005259.1 + 66940 0.68 0.717014
Target:  5'- ---gGGGUGagCGG-GACACCGGCGAg -3'
miRNA:   3'- cucgCCUACaaGUCgCUGUGGCUGCU- -5'
23332 3' -54.4 NC_005259.1 + 39743 0.68 0.706413
Target:  5'- uGGGcCGGAUGUgcgaCAGCGGCAgCaGCGGc -3'
miRNA:   3'- -CUC-GCCUACAa---GUCGCUGUgGcUGCU- -5'
23332 3' -54.4 NC_005259.1 + 52767 0.68 0.700018
Target:  5'- cGAGCucgucGGUGUcggCAGCGugugccgucgacagcACACCGACGAg -3'
miRNA:   3'- -CUCGc----CUACAa--GUCGC---------------UGUGGCUGCU- -5'
23332 3' -54.4 NC_005259.1 + 64140 0.68 0.68501
Target:  5'- cGAGCGGcccgUCGGCGAUGCCcuuGACGu -3'
miRNA:   3'- -CUCGCCuacaAGUCGCUGUGG---CUGCu -5'
23332 3' -54.4 NC_005259.1 + 52443 0.68 0.68501
Target:  5'- cGAGCucucGAUGUUCGGCGGauggcagacCACCGcccGCGAa -3'
miRNA:   3'- -CUCGc---CUACAAGUCGCU---------GUGGC---UGCU- -5'
23332 3' -54.4 NC_005259.1 + 20644 0.68 0.68501
Target:  5'- -cGCGacacGUUCGGCGGCACCGGggcCGAg -3'
miRNA:   3'- cuCGCcua-CAAGUCGCUGUGGCU---GCU- -5'
23332 3' -54.4 NC_005259.1 + 35669 0.68 0.68501
Target:  5'- cAGCGcGGUGguggugcaCAGCGACGCCGugcccgGCGAg -3'
miRNA:   3'- cUCGC-CUACaa------GUCGCUGUGGC------UGCU- -5'
23332 3' -54.4 NC_005259.1 + 27922 0.69 0.673149
Target:  5'- cGGGUGGuagcgGUUCGGCGACccagcucGCCGGUGAa -3'
miRNA:   3'- -CUCGCCua---CAAGUCGCUG-------UGGCUGCU- -5'
23332 3' -54.4 NC_005259.1 + 16844 0.7 0.609082
Target:  5'- aGGCGGGUGgcCAugacUGAUACCGGCGAg -3'
miRNA:   3'- cUCGCCUACaaGUc---GCUGUGGCUGCU- -5'
23332 3' -54.4 NC_005259.1 + 58728 0.7 0.609082
Target:  5'- -cGgGGGUGUcgUUGGCaccGGCACCGGCGAa -3'
miRNA:   3'- cuCgCCUACA--AGUCG---CUGUGGCUGCU- -5'
23332 3' -54.4 NC_005259.1 + 3105 0.72 0.472466
Target:  5'- uGAGCGGgcGgcCAuugcGCGGCACCGugGGc -3'
miRNA:   3'- -CUCGCCuaCaaGU----CGCUGUGGCugCU- -5'
23332 3' -54.4 NC_005259.1 + 6031 1.09 0.001728
Target:  5'- uGAGCGGAUGUUCAGCGACACCGACGAg -3'
miRNA:   3'- -CUCGCCUACAAGUCGCUGUGGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.