miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23332 5' -58.1 NC_005259.1 + 622 0.67 0.600717
Target:  5'- uGCuGGUGAUCGaccgugacaacgccaCCGCCGA---GGACGu -3'
miRNA:   3'- gCG-CCACUAGC---------------GGCGGCUuguCCUGC- -5'
23332 5' -58.1 NC_005259.1 + 3416 0.69 0.484655
Target:  5'- gGCGG-GAUCGacCCGCCGAgaaAGGAuCGa -3'
miRNA:   3'- gCGCCaCUAGC--GGCGGCUug-UCCU-GC- -5'
23332 5' -58.1 NC_005259.1 + 4347 0.71 0.392378
Target:  5'- uCGCGGUGAUgaG-CGCCGGACGGcACGc -3'
miRNA:   3'- -GCGCCACUAg-CgGCGGCUUGUCcUGC- -5'
23332 5' -58.1 NC_005259.1 + 6066 1.08 0.001041
Target:  5'- gCGCGGUGAUCGCCGCCGAACAGGACGc -3'
miRNA:   3'- -GCGCCACUAGCGGCGGCUUGUCCUGC- -5'
23332 5' -58.1 NC_005259.1 + 10685 0.68 0.554988
Target:  5'- cCGCcucuuuGUCGCCGuuGAGCAuGGACGg -3'
miRNA:   3'- -GCGccac--UAGCGGCggCUUGU-CCUGC- -5'
23332 5' -58.1 NC_005259.1 + 10733 0.69 0.464376
Target:  5'- uGuCGGUGAUcaccgcgCGCUGCCGGGCGaucaucaugucGGGCGg -3'
miRNA:   3'- gC-GCCACUA-------GCGGCGGCUUGU-----------CCUGC- -5'
23332 5' -58.1 NC_005259.1 + 13420 0.66 0.637459
Target:  5'- gGcCGG-GGUCGCCGCCGGGgccgcgcUAGG-CGu -3'
miRNA:   3'- gC-GCCaCUAGCGGCGGCUU-------GUCCuGC- -5'
23332 5' -58.1 NC_005259.1 + 14158 0.67 0.575675
Target:  5'- gCGCGucgugugGAUC-UCGCCGGGCGGGugGc -3'
miRNA:   3'- -GCGCca-----CUAGcGGCGGCUUGUCCugC- -5'
23332 5' -58.1 NC_005259.1 + 14528 0.7 0.418869
Target:  5'- aCGCGGUGcguuUCGgUGCCGAguucguccgGCAGGcCGa -3'
miRNA:   3'- -GCGCCACu---AGCgGCGGCU---------UGUCCuGC- -5'
23332 5' -58.1 NC_005259.1 + 16703 0.68 0.514334
Target:  5'- cCGaGGUGA---CCGCCGAGCAGGuCGc -3'
miRNA:   3'- -GCgCCACUagcGGCGGCUUGUCCuGC- -5'
23332 5' -58.1 NC_005259.1 + 17063 0.67 0.621698
Target:  5'- gGCGGUGcgCgcauuugugcgucagGCCGCCGAuauuGGGCu -3'
miRNA:   3'- gCGCCACuaG---------------CGGCGGCUugu-CCUGc -5'
23332 5' -58.1 NC_005259.1 + 17473 0.7 0.427937
Target:  5'- cCGUGGUGA-CGCCcgGCCaugcGGGCAaGGACGg -3'
miRNA:   3'- -GCGCCACUaGCGG--CGG----CUUGU-CCUGC- -5'
23332 5' -58.1 NC_005259.1 + 20103 0.66 0.680399
Target:  5'- cCGUGGUGA--GCCGCCGucucaAGGcCGc -3'
miRNA:   3'- -GCGCCACUagCGGCGGCuug--UCCuGC- -5'
23332 5' -58.1 NC_005259.1 + 21250 0.66 0.632205
Target:  5'- gCGCGGguucuggaaagcccaUGGUCGUCGgccugaCGAGCAGGcCGa -3'
miRNA:   3'- -GCGCC---------------ACUAGCGGCg-----GCUUGUCCuGC- -5'
23332 5' -58.1 NC_005259.1 + 22988 0.71 0.392378
Target:  5'- -cCGGUGucgaCGCCGCCGAggucACcgAGGACGg -3'
miRNA:   3'- gcGCCACua--GCGGCGGCU----UG--UCCUGC- -5'
23332 5' -58.1 NC_005259.1 + 23315 0.71 0.383793
Target:  5'- gCGCGGUcGGU-GUCGCCGAGCcGGAUu -3'
miRNA:   3'- -GCGCCA-CUAgCGGCGGCUUGuCCUGc -5'
23332 5' -58.1 NC_005259.1 + 23705 0.71 0.383793
Target:  5'- cCGCGucGUGAUCG-CGCCGGACGGuuCGg -3'
miRNA:   3'- -GCGC--CACUAGCgGCGGCUUGUCcuGC- -5'
23332 5' -58.1 NC_005259.1 + 26199 0.68 0.554988
Target:  5'- uGCGGcagcaUGGcCGCCGCCGuguuCAGGAa- -3'
miRNA:   3'- gCGCC-----ACUaGCGGCGGCuu--GUCCUgc -5'
23332 5' -58.1 NC_005259.1 + 26417 0.71 0.392378
Target:  5'- gGCGGUGc-CGCCguagaacgcaccGCCGAGCGGG-CGg -3'
miRNA:   3'- gCGCCACuaGCGG------------CGGCUUGUCCuGC- -5'
23332 5' -58.1 NC_005259.1 + 26826 0.72 0.342778
Target:  5'- gGCGGUGGU-GCCGgggcggucugcUCGGGCAGGAUGc -3'
miRNA:   3'- gCGCCACUAgCGGC-----------GGCUUGUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.