miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23332 5' -58.1 NC_005259.1 + 26199 0.68 0.554988
Target:  5'- uGCGGcagcaUGGcCGCCGCCGuguuCAGGAa- -3'
miRNA:   3'- gCGCC-----ACUaGCGGCGGCuu--GUCCUgc -5'
23332 5' -58.1 NC_005259.1 + 10685 0.68 0.554988
Target:  5'- cCGCcucuuuGUCGCCGuuGAGCAuGGACGg -3'
miRNA:   3'- -GCGccac--UAGCGGCggCUUGU-CCUGC- -5'
23332 5' -58.1 NC_005259.1 + 64422 0.68 0.544725
Target:  5'- cCGUGaGgGAUCGCCGaCGAGCugccGGGGCGc -3'
miRNA:   3'- -GCGC-CaCUAGCGGCgGCUUG----UCCUGC- -5'
23332 5' -58.1 NC_005259.1 + 66577 0.68 0.534524
Target:  5'- uCGgGGUuauuucccgaugGAUCGCCGCauccaugcaGGugGGGGCGg -3'
miRNA:   3'- -GCgCCA------------CUAGCGGCGg--------CUugUCCUGC- -5'
23332 5' -58.1 NC_005259.1 + 42946 0.68 0.524392
Target:  5'- cCGUGGgcGAggcCGCCGUuguCGAACGGGAUGc -3'
miRNA:   3'- -GCGCCa-CUa--GCGGCG---GCUUGUCCUGC- -5'
23332 5' -58.1 NC_005259.1 + 16703 0.68 0.514334
Target:  5'- cCGaGGUGA---CCGCCGAGCAGGuCGc -3'
miRNA:   3'- -GCgCCACUagcGGCGGCUUGUCCuGC- -5'
23332 5' -58.1 NC_005259.1 + 51644 0.68 0.514334
Target:  5'- aGCGGUaggcgaacgGGUUGCCGCgCGGGCGcgucGGGCa -3'
miRNA:   3'- gCGCCA---------CUAGCGGCG-GCUUGU----CCUGc -5'
23332 5' -58.1 NC_005259.1 + 33540 0.69 0.49446
Target:  5'- aCGCcugcUGAUCGUCGCCGGuCAGGAa- -3'
miRNA:   3'- -GCGcc--ACUAGCGGCGGCUuGUCCUgc -5'
23332 5' -58.1 NC_005259.1 + 46895 0.69 0.49446
Target:  5'- cCGCGaUGAgCGcCCGCCGAGCAGucCGc -3'
miRNA:   3'- -GCGCcACUaGC-GGCGGCUUGUCcuGC- -5'
23332 5' -58.1 NC_005259.1 + 45305 0.69 0.49446
Target:  5'- gCGcCGGUGAcgccgaggcCGCCGCCGAACuGcGugGc -3'
miRNA:   3'- -GC-GCCACUa--------GCGGCGGCUUGuC-CugC- -5'
23332 5' -58.1 NC_005259.1 + 3416 0.69 0.484655
Target:  5'- gGCGG-GAUCGacCCGCCGAgaaAGGAuCGa -3'
miRNA:   3'- gCGCCaCUAGC--GGCGGCUug-UCCU-GC- -5'
23332 5' -58.1 NC_005259.1 + 41470 0.69 0.474945
Target:  5'- aGCGGcccgUGA-CGCCGUCGAGCAcGACc -3'
miRNA:   3'- gCGCC----ACUaGCGGCGGCUUGUcCUGc -5'
23332 5' -58.1 NC_005259.1 + 10733 0.69 0.464376
Target:  5'- uGuCGGUGAUcaccgcgCGCUGCCGGGCGaucaucaugucGGGCGg -3'
miRNA:   3'- gC-GCCACUA-------GCGGCGGCUUGU-----------CCUGC- -5'
23332 5' -58.1 NC_005259.1 + 17473 0.7 0.427937
Target:  5'- cCGUGGUGA-CGCCcgGCCaugcGGGCAaGGACGg -3'
miRNA:   3'- -GCGCCACUaGCGG--CGG----CUUGU-CCUGC- -5'
23332 5' -58.1 NC_005259.1 + 28512 0.7 0.427937
Target:  5'- gGCGG-GAUCGacCCGCCGAGgaAGGAUu -3'
miRNA:   3'- gCGCCaCUAGC--GGCGGCUUg-UCCUGc -5'
23332 5' -58.1 NC_005259.1 + 43067 0.7 0.425204
Target:  5'- gGuCGGUGAggaacgcgagcccgUUGCCGCCGAACAGucccGugGu -3'
miRNA:   3'- gC-GCCACU--------------AGCGGCGGCUUGUC----CugC- -5'
23332 5' -58.1 NC_005259.1 + 14528 0.7 0.418869
Target:  5'- aCGCGGUGcguuUCGgUGCCGAguucguccgGCAGGcCGa -3'
miRNA:   3'- -GCGCCACu---AGCgGCGGCU---------UGUCCuGC- -5'
23332 5' -58.1 NC_005259.1 + 22988 0.71 0.392378
Target:  5'- -cCGGUGucgaCGCCGCCGAggucACcgAGGACGg -3'
miRNA:   3'- gcGCCACua--GCGGCGGCU----UG--UCCUGC- -5'
23332 5' -58.1 NC_005259.1 + 4347 0.71 0.392378
Target:  5'- uCGCGGUGAUgaG-CGCCGGACGGcACGc -3'
miRNA:   3'- -GCGCCACUAg-CgGCGGCUUGUCcUGC- -5'
23332 5' -58.1 NC_005259.1 + 26417 0.71 0.392378
Target:  5'- gGCGGUGc-CGCCguagaacgcaccGCCGAGCGGG-CGg -3'
miRNA:   3'- gCGCCACuaGCGG------------CGGCUUGUCCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.