miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23333 5' -51 NC_005259.1 + 47570 0.67 0.893101
Target:  5'- cGCGCGcugcugucccUCGGCGGUguUGCCGaauaucuggUCGGCg -3'
miRNA:   3'- uCGUGU----------AGUUGCUAguACGGC---------AGCUG- -5'
23333 5' -51 NC_005259.1 + 7397 0.67 0.893101
Target:  5'- cGCGagacCcgCAACGGcauccUCGUcGCCGUCGGCg -3'
miRNA:   3'- uCGU----GuaGUUGCU-----AGUA-CGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 11175 0.67 0.890903
Target:  5'- uGCAgAUCAGCGccucaugcauagcaGUCAccgcacccuuUGCCGUCGcACa -3'
miRNA:   3'- uCGUgUAGUUGC--------------UAGU----------ACGGCAGC-UG- -5'
23333 5' -51 NC_005259.1 + 65805 0.68 0.88568
Target:  5'- cGCugGUCGaaACGcug--GCCGUCGACc -3'
miRNA:   3'- uCGugUAGU--UGCuaguaCGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 54493 0.68 0.88568
Target:  5'- aGGguCAUCGGCGggCAUGgCGgCGAUg -3'
miRNA:   3'- -UCguGUAGUUGCuaGUACgGCaGCUG- -5'
23333 5' -51 NC_005259.1 + 49640 0.68 0.88568
Target:  5'- cAGcCGCGUCGGCGAUgGcgGCC-UCGAUa -3'
miRNA:   3'- -UC-GUGUAGUUGCUAgUa-CGGcAGCUG- -5'
23333 5' -51 NC_005259.1 + 41189 0.68 0.877989
Target:  5'- -aUugAUCGAUGGUgAUGCCGUUGuCg -3'
miRNA:   3'- ucGugUAGUUGCUAgUACGGCAGCuG- -5'
23333 5' -51 NC_005259.1 + 66431 0.68 0.870036
Target:  5'- cGcCACGUgaUGACGGUCucgaaaGUGCCGUCGAa -3'
miRNA:   3'- uC-GUGUA--GUUGCUAG------UACGGCAGCUg -5'
23333 5' -51 NC_005259.1 + 36701 0.68 0.870036
Target:  5'- cGCcCGcCGAUGAgcUCGUGCCGcUCGACc -3'
miRNA:   3'- uCGuGUaGUUGCU--AGUACGGC-AGCUG- -5'
23333 5' -51 NC_005259.1 + 8068 0.68 0.870036
Target:  5'- cGCcgACAUCGA-GAUCGUGCCGcgcUGGCg -3'
miRNA:   3'- uCG--UGUAGUUgCUAGUACGGCa--GCUG- -5'
23333 5' -51 NC_005259.1 + 27156 0.68 0.861826
Target:  5'- uGUugGggcCAACGA---UGCCGUCGGCg -3'
miRNA:   3'- uCGugUa--GUUGCUaguACGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 30851 0.68 0.861826
Target:  5'- uGCACcUCAAgGuagccGUCAUcGCCGUCGAg -3'
miRNA:   3'- uCGUGuAGUUgC-----UAGUA-CGGCAGCUg -5'
23333 5' -51 NC_005259.1 + 42602 0.68 0.861826
Target:  5'- cAGUcgACAUCGGCGGUCAUGagcccgaUGUCGcGCg -3'
miRNA:   3'- -UCG--UGUAGUUGCUAGUACg------GCAGC-UG- -5'
23333 5' -51 NC_005259.1 + 19178 0.68 0.853368
Target:  5'- cGGCGC-UCAACGG---UGCCcUCGACa -3'
miRNA:   3'- -UCGUGuAGUUGCUaguACGGcAGCUG- -5'
23333 5' -51 NC_005259.1 + 51685 0.68 0.853368
Target:  5'- gGGCGCG-CGAUGGUCucauagGUGCCGaacugUCGACc -3'
miRNA:   3'- -UCGUGUaGUUGCUAG------UACGGC-----AGCUG- -5'
23333 5' -51 NC_005259.1 + 34374 0.69 0.835738
Target:  5'- cGGCGCGuaaccUCGACGcgCAacUGCUGcUCGACc -3'
miRNA:   3'- -UCGUGU-----AGUUGCuaGU--ACGGC-AGCUG- -5'
23333 5' -51 NC_005259.1 + 56929 0.69 0.817221
Target:  5'- -cCGCGUCggUGAgCAUGCgGUUGGCg -3'
miRNA:   3'- ucGUGUAGuuGCUaGUACGgCAGCUG- -5'
23333 5' -51 NC_005259.1 + 14229 0.7 0.797896
Target:  5'- cGCGCGUCGuGCGuAUCggGCCGggcaaCGACg -3'
miRNA:   3'- uCGUGUAGU-UGC-UAGuaCGGCa----GCUG- -5'
23333 5' -51 NC_005259.1 + 40560 0.7 0.777853
Target:  5'- cGCGCGcCcgcGCGGUguUGCUGUCGGCg -3'
miRNA:   3'- uCGUGUaGu--UGCUAguACGGCAGCUG- -5'
23333 5' -51 NC_005259.1 + 28196 0.7 0.771713
Target:  5'- -aCGCGUCccacauguguccguaGACGGUCGUGCCGccaccgUCGGCg -3'
miRNA:   3'- ucGUGUAG---------------UUGCUAGUACGGC------AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.