miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23334 3' -55 NC_005259.1 + 37293 0.65 0.791477
Target:  5'- uGCAUG-GCGGUGCCc---GCCGGgucaGCa -3'
miRNA:   3'- -CGUACuCGUCGUGGuuacCGGCCa---CG- -5'
23334 3' -55 NC_005259.1 + 4840 0.65 0.791477
Target:  5'- aCAUGAGaauCACCAA-GGgCGGUGUc -3'
miRNA:   3'- cGUACUCgucGUGGUUaCCgGCCACG- -5'
23334 3' -55 NC_005259.1 + 6451 0.65 0.791477
Target:  5'- cGCGcUGAuCGGCAgCGuc-GCCGGUGCc -3'
miRNA:   3'- -CGU-ACUcGUCGUgGUuacCGGCCACG- -5'
23334 3' -55 NC_005259.1 + 49351 0.66 0.781662
Target:  5'- gGCGaGAGguGcCGCgCGAUgaagaGGCCGGUGa -3'
miRNA:   3'- -CGUaCUCguC-GUG-GUUA-----CCGGCCACg -5'
23334 3' -55 NC_005259.1 + 7226 0.66 0.781662
Target:  5'- uGCGUGAugaacgacgGCAGCcgcGCCGGUG-UCGaGUGCg -3'
miRNA:   3'- -CGUACU---------CGUCG---UGGUUACcGGC-CACG- -5'
23334 3' -55 NC_005259.1 + 28758 0.66 0.778688
Target:  5'- aGCGUGAGaucGuCGCCGGUGccgacgagguacccGCCGGUcGCu -3'
miRNA:   3'- -CGUACUCgu-C-GUGGUUAC--------------CGGCCA-CG- -5'
23334 3' -55 NC_005259.1 + 14509 0.66 0.771694
Target:  5'- cGCAUGcacaccGGCgAGCACgCGGUGcGUuuCGGUGCc -3'
miRNA:   3'- -CGUAC------UCG-UCGUG-GUUAC-CG--GCCACG- -5'
23334 3' -55 NC_005259.1 + 4456 0.66 0.771694
Target:  5'- -aGUGGGCAGCguauggGCCAA-GGCCaucggcGGUGg -3'
miRNA:   3'- cgUACUCGUCG------UGGUUaCCGG------CCACg -5'
23334 3' -55 NC_005259.1 + 46062 0.66 0.771694
Target:  5'- gGCcuUGAGCugcucaAGCACCGccggGGCgagCGGUGCc -3'
miRNA:   3'- -CGu-ACUCG------UCGUGGUua--CCG---GCCACG- -5'
23334 3' -55 NC_005259.1 + 63847 0.66 0.771694
Target:  5'- gGCA--AGCGcGUACCGgcgagGUGGCCGGcugGCc -3'
miRNA:   3'- -CGUacUCGU-CGUGGU-----UACCGGCCa--CG- -5'
23334 3' -55 NC_005259.1 + 5355 0.66 0.771694
Target:  5'- cGCAUGAGCcgaccuaucGCGCCg--GGCaaGUGCc -3'
miRNA:   3'- -CGUACUCGu--------CGUGGuuaCCGgcCACG- -5'
23334 3' -55 NC_005259.1 + 45822 0.66 0.768675
Target:  5'- aGCcgGGGaugaccaugccguccGCACCAccggGGCCGGUGg -3'
miRNA:   3'- -CGuaCUCgu-------------CGUGGUua--CCGGCCACg -5'
23334 3' -55 NC_005259.1 + 39766 0.66 0.761583
Target:  5'- aGCAgcGGCAGCcugcuGCUggUGaUCGGUGCg -3'
miRNA:   3'- -CGUacUCGUCG-----UGGuuACcGGCCACG- -5'
23334 3' -55 NC_005259.1 + 13432 0.66 0.758524
Target:  5'- cGCcgGGGCcGCGCUAggcGUGaccgucggcgcggcGCUGGUGCu -3'
miRNA:   3'- -CGuaCUCGuCGUGGU---UAC--------------CGGCCACG- -5'
23334 3' -55 NC_005259.1 + 56293 0.66 0.751341
Target:  5'- gGCAccAGCAG-ACCAcGUGGCCGGa-- -3'
miRNA:   3'- -CGUacUCGUCgUGGU-UACCGGCCacg -5'
23334 3' -55 NC_005259.1 + 43955 0.66 0.740978
Target:  5'- gGCgAUGGGCGGgGCCGccgccugaccGaGGgCGGUGCc -3'
miRNA:   3'- -CG-UACUCGUCgUGGU----------UaCCgGCCACG- -5'
23334 3' -55 NC_005259.1 + 68083 0.67 0.730506
Target:  5'- uGC-UGAuCAGC-UCGAUGGCCGGgGUa -3'
miRNA:   3'- -CGuACUcGUCGuGGUUACCGGCCaCG- -5'
23334 3' -55 NC_005259.1 + 17318 0.67 0.730506
Target:  5'- ---cGAGCGGUACCccgagGGUGuGCCGGUc- -3'
miRNA:   3'- cguaCUCGUCGUGG-----UUAC-CGGCCAcg -5'
23334 3' -55 NC_005259.1 + 41589 0.67 0.730506
Target:  5'- aGCGUGAGCGGuCGCgc---GUCGGUGUu -3'
miRNA:   3'- -CGUACUCGUC-GUGguuacCGGCCACG- -5'
23334 3' -55 NC_005259.1 + 51069 0.67 0.730506
Target:  5'- ---cGAGCAGCGCCucgGUGGCauG-GCc -3'
miRNA:   3'- cguaCUCGUCGUGGu--UACCGgcCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.