miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23334 5' -59.9 NC_005259.1 + 1297 0.72 0.231237
Target:  5'- cGAGG-UCGAGCUcuACGCGguCGUgaGCGCCa -3'
miRNA:   3'- -CUCCuAGCUCGA--UGCGC--GCGg-CGCGG- -5'
23334 5' -59.9 NC_005259.1 + 1339 0.69 0.386239
Target:  5'- cGA-GAUCGAGCgcaACgGUGCcuacugggccgcucGCCGCGCCg -3'
miRNA:   3'- -CUcCUAGCUCGa--UG-CGCG--------------CGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 1895 0.72 0.254645
Target:  5'- cGAGaucGcgCGAGCUGCcgaggaaGCGCGCCGCcCCa -3'
miRNA:   3'- -CUC---CuaGCUCGAUG-------CGCGCGGCGcGG- -5'
23334 5' -59.9 NC_005259.1 + 4627 0.67 0.498025
Target:  5'- -uGGcgCGAGUUcuggauagugccCGCGCaCCGCGCCu -3'
miRNA:   3'- cuCCuaGCUCGAu-----------GCGCGcGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 5501 1.1 0.000407
Target:  5'- cGAGGAUCGAGCUACGCGCGCCGCGCCc -3'
miRNA:   3'- -CUCCUAGCUCGAUGCGCGCGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 5650 0.67 0.499999
Target:  5'- cGAGGAcggCGGGCgcuacACGCGCGacaacaucgccCCGCacuGCCu -3'
miRNA:   3'- -CUCCUa--GCUCGa----UGCGCGC-----------GGCG---CGG- -5'
23334 5' -59.9 NC_005259.1 + 5909 0.66 0.519924
Target:  5'- cGAGG-UCGAGgUGCuGCGCaCCGuCGaCCg -3'
miRNA:   3'- -CUCCuAGCUCgAUG-CGCGcGGC-GC-GG- -5'
23334 5' -59.9 NC_005259.1 + 6190 0.73 0.219952
Target:  5'- uGGGuGAUCuGAGCaGCGUGagcggggugagcCGCCGCGCCg -3'
miRNA:   3'- -CUC-CUAG-CUCGaUGCGC------------GCGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 6252 0.7 0.331876
Target:  5'- -uGGGUCGAuaucccGCacCGC-CGCCGCGCCu -3'
miRNA:   3'- cuCCUAGCU------CGauGCGcGCGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 7201 0.66 0.537101
Target:  5'- -cGGAcgcacCGGGCUGCgguggaucuGCGUgaugaacgacggcaGCCGCGCCg -3'
miRNA:   3'- cuCCUa----GCUCGAUG---------CGCG--------------CGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 8123 0.69 0.380291
Target:  5'- -cGGccuaGUCG-GCUACGgGUGCCccGCGCCc -3'
miRNA:   3'- cuCC----UAGCuCGAUGCgCGCGG--CGCGG- -5'
23334 5' -59.9 NC_005259.1 + 8464 0.67 0.470771
Target:  5'- cGAGGua-GAGCUGCacgaGCaCCGCGCUg -3'
miRNA:   3'- -CUCCuagCUCGAUGcg--CGcGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 8653 0.68 0.424091
Target:  5'- cGAGGcugugGUCGGGCUgccACGCGgGCaacgGgGCCg -3'
miRNA:   3'- -CUCC-----UAGCUCGA---UGCGCgCGg---CgCGG- -5'
23334 5' -59.9 NC_005259.1 + 8807 0.7 0.331876
Target:  5'- cGAGGAUcuucucgcgcCGGGCcggugaguUGaCGCGCUGCGCCg -3'
miRNA:   3'- -CUCCUA----------GCUCGau------GC-GCGCGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 9367 0.69 0.362819
Target:  5'- uAGGucguacucggCGAGCUcggagagcaacgcACGCGCGCCccgguacggguGCGCCa -3'
miRNA:   3'- cUCCua--------GCUCGA-------------UGCGCGCGG-----------CGCGG- -5'
23334 5' -59.9 NC_005259.1 + 9501 0.71 0.26159
Target:  5'- cGAGGAaCGuGCgcucgucGCGCGCGUCGacCGCCg -3'
miRNA:   3'- -CUCCUaGCuCGa------UGCGCGCGGC--GCGG- -5'
23334 5' -59.9 NC_005259.1 + 14212 0.66 0.525963
Target:  5'- cGGGAUCaacuacccgGCGCGCGUCGUGCg -3'
miRNA:   3'- cUCCUAGcucga----UGCGCGCGGCGCGg -5'
23334 5' -59.9 NC_005259.1 + 14867 0.69 0.380291
Target:  5'- cGAGGuUCGcGCUGCcCGaGCCGcCGCCg -3'
miRNA:   3'- -CUCCuAGCuCGAUGcGCgCGGC-GCGG- -5'
23334 5' -59.9 NC_005259.1 + 15376 0.68 0.396576
Target:  5'- -uGGG-CGAGCUGC-CGCaaccgugGCCGCGCa -3'
miRNA:   3'- cuCCUaGCUCGAUGcGCG-------CGGCGCGg -5'
23334 5' -59.9 NC_005259.1 + 16362 0.66 0.519924
Target:  5'- cGGaGAUCG---UGCGUGcCGCUGCGCCg -3'
miRNA:   3'- cUC-CUAGCucgAUGCGC-GCGGCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.