miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23334 5' -59.9 NC_005259.1 + 8464 0.67 0.470771
Target:  5'- cGAGGua-GAGCUGCacgaGCaCCGCGCUg -3'
miRNA:   3'- -CUCCuagCUCGAUGcg--CGcGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 25072 0.67 0.461222
Target:  5'- aAGGGUgGcGCUGCcacCGcCGCUGCGCCc -3'
miRNA:   3'- cUCCUAgCuCGAUGc--GC-GCGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 56253 0.67 0.451776
Target:  5'- uGGGAUCG-GCgGCcuugaGCGCCGcCGCCc -3'
miRNA:   3'- cUCCUAGCuCGaUGcg---CGCGGC-GCGG- -5'
23334 5' -59.9 NC_005259.1 + 48594 0.68 0.433207
Target:  5'- uGAGcuuGUCGAGCgcggGCGCuacCGCCGUGCg -3'
miRNA:   3'- -CUCc--UAGCUCGa---UGCGc--GCGGCGCGg -5'
23334 5' -59.9 NC_005259.1 + 22878 0.68 0.433207
Target:  5'- aGAuGAUCG-GU--CGCGCGCUGCGUCu -3'
miRNA:   3'- -CUcCUAGCuCGauGCGCGCGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 8653 0.68 0.424091
Target:  5'- cGAGGcugugGUCGGGCUgccACGCGgGCaacgGgGCCg -3'
miRNA:   3'- -CUCC-----UAGCUCGA---UGCGCgCGg---CgCGG- -5'
23334 5' -59.9 NC_005259.1 + 51018 0.68 0.424091
Target:  5'- cGuuGGUCGuGCUACcgacgagcgGCGgGCaCGCGCCa -3'
miRNA:   3'- -CucCUAGCuCGAUG---------CGCgCG-GCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 19692 0.68 0.424091
Target:  5'- cGGGAUCGAGCagGCuCGCacguugGCUGcCGCCg -3'
miRNA:   3'- cUCCUAGCUCGa-UGcGCG------CGGC-GCGG- -5'
23334 5' -59.9 NC_005259.1 + 66948 0.68 0.41509
Target:  5'- cGGGAcaccggCGAGCUGuuucuUGCGCGCCuCGCg -3'
miRNA:   3'- cUCCUa-----GCUCGAU-----GCGCGCGGcGCGg -5'
23334 5' -59.9 NC_005259.1 + 48438 0.68 0.414197
Target:  5'- cGAGGcgCGAgGCagcgGCaGCGCGUuccaccgCGCGCCg -3'
miRNA:   3'- -CUCCuaGCU-CGa---UG-CGCGCG-------GCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 48552 0.68 0.406208
Target:  5'- --cGGUCuuGUugUACGCGCGCUGCGUCu -3'
miRNA:   3'- cucCUAGcuCG--AUGCGCGCGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 60848 0.68 0.406208
Target:  5'- cGAGGucgCGAGaCU-CGCGgGUCGCGUUg -3'
miRNA:   3'- -CUCCua-GCUC-GAuGCGCgCGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 27840 0.68 0.406208
Target:  5'- cGAGGuaggccgCGAGgU-CGCGCGCCGUacgaccGCCc -3'
miRNA:   3'- -CUCCua-----GCUCgAuGCGCGCGGCG------CGG- -5'
23334 5' -59.9 NC_005259.1 + 45396 0.68 0.397446
Target:  5'- cGGGGUCGccGCcgaGCGCGCugaugGCCGcCGCCg -3'
miRNA:   3'- cUCCUAGCu-CGa--UGCGCG-----CGGC-GCGG- -5'
23334 5' -59.9 NC_005259.1 + 15376 0.68 0.396576
Target:  5'- -uGGG-CGAGCUGC-CGCaaccgugGCCGCGCa -3'
miRNA:   3'- cuCCUaGCUCGAUGcGCG-------CGGCGCGg -5'
23334 5' -59.9 NC_005259.1 + 46932 0.69 0.388806
Target:  5'- -----cCGAGCU-UGCcCGCCGCGCCg -3'
miRNA:   3'- cuccuaGCUCGAuGCGcGCGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 1339 0.69 0.386239
Target:  5'- cGA-GAUCGAGCgcaACgGUGCcuacugggccgcucGCCGCGCCg -3'
miRNA:   3'- -CUcCUAGCUCGa--UG-CGCG--------------CGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 48054 0.69 0.380291
Target:  5'- -uGGccacggCGGGUaGCGC-CGCCGCGCCc -3'
miRNA:   3'- cuCCua----GCUCGaUGCGcGCGGCGCGG- -5'
23334 5' -59.9 NC_005259.1 + 14867 0.69 0.380291
Target:  5'- cGAGGuUCGcGCUGCcCGaGCCGcCGCCg -3'
miRNA:   3'- -CUCCuAGCuCGAUGcGCgCGGC-GCGG- -5'
23334 5' -59.9 NC_005259.1 + 8123 0.69 0.380291
Target:  5'- -cGGccuaGUCG-GCUACGgGUGCCccGCGCCc -3'
miRNA:   3'- cuCC----UAGCuCGAUGCgCGCGG--CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.