miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23336 5' -56.7 NC_005259.1 + 58725 0.65 0.744651
Target:  5'- cGCCGGggGUgucguuggcaccggCACCGGCGAaguUCgGCGa-- -3'
miRNA:   3'- -CGGCCa-CA--------------GUGGCCGCU---AGaCGCauc -5'
23336 5' -56.7 NC_005259.1 + 13793 0.66 0.727341
Target:  5'- aGCaguGGUGcgacaUCACCGGCGAgcaccacgUgUGCGUGa -3'
miRNA:   3'- -CGg--CCAC-----AGUGGCCGCU--------AgACGCAUc -5'
23336 5' -56.7 NC_005259.1 + 45522 0.66 0.706651
Target:  5'- cGCCGGUGUUgGCCGcCGuggCUGCGa-- -3'
miRNA:   3'- -CGGCCACAG-UGGCcGCua-GACGCauc -5'
23336 5' -56.7 NC_005259.1 + 63858 0.66 0.706651
Target:  5'- aCCGGcgagGUgGCCGGCuGGccUUGCGUGGg -3'
miRNA:   3'- cGGCCa---CAgUGGCCG-CUa-GACGCAUC- -5'
23336 5' -56.7 NC_005259.1 + 61737 0.67 0.685687
Target:  5'- aGCaGGUGUgCGuCCGGCGAgaUCUGUGcGGc -3'
miRNA:   3'- -CGgCCACA-GU-GGCCGCU--AGACGCaUC- -5'
23336 5' -56.7 NC_005259.1 + 28005 0.67 0.675128
Target:  5'- uGCCGGggcgggGUCGCCGG-GGUUgcgcGCGUu- -3'
miRNA:   3'- -CGGCCa-----CAGUGGCCgCUAGa---CGCAuc -5'
23336 5' -56.7 NC_005259.1 + 19068 0.67 0.675128
Target:  5'- uGUCGGUGUCGcgguCCGGCGcuacgacaagCUGCGc-- -3'
miRNA:   3'- -CGGCCACAGU----GGCCGCua--------GACGCauc -5'
23336 5' -56.7 NC_005259.1 + 57472 0.67 0.643262
Target:  5'- gGCCGGUGgCACCGGacacGUCgaGCGUc- -3'
miRNA:   3'- -CGGCCACaGUGGCCgc--UAGa-CGCAuc -5'
23336 5' -56.7 NC_005259.1 + 54488 0.67 0.632608
Target:  5'- cGCCGaGgGUCAUCGGCGggCaugGCGgcGa -3'
miRNA:   3'- -CGGC-CaCAGUGGCCGCuaGa--CGCauC- -5'
23336 5' -56.7 NC_005259.1 + 3297 0.67 0.632608
Target:  5'- cGCCGGUccC-UCGGCGAgcgCUGCGUc- -3'
miRNA:   3'- -CGGCCAcaGuGGCCGCUa--GACGCAuc -5'
23336 5' -56.7 NC_005259.1 + 8406 0.68 0.579505
Target:  5'- aGCCGGgccaccUCGCUGGCGAgcaUGCGa-- -3'
miRNA:   3'- -CGGCCac----AGUGGCCGCUag-ACGCauc -5'
23336 5' -56.7 NC_005259.1 + 41089 0.69 0.548068
Target:  5'- aGCCGGUcGUagUCGGCGGUCgGCGg-- -3'
miRNA:   3'- -CGGCCA-CAguGGCCGCUAGaCGCauc -5'
23336 5' -56.7 NC_005259.1 + 9535 0.7 0.507044
Target:  5'- cGCCGG-GUCACCGGaGAgCUGCc--- -3'
miRNA:   3'- -CGGCCaCAGUGGCCgCUaGACGcauc -5'
23336 5' -56.7 NC_005259.1 + 7208 0.7 0.496989
Target:  5'- aCCGGg--CugCGGUgGAUCUGCGUGa -3'
miRNA:   3'- cGGCCacaGugGCCG-CUAGACGCAUc -5'
23336 5' -56.7 NC_005259.1 + 11038 0.7 0.477154
Target:  5'- cGCCGGgugGUCACCGcaugacguGcCGAUCggcucaGCGUGGa -3'
miRNA:   3'- -CGGCCa--CAGUGGC--------C-GCUAGa-----CGCAUC- -5'
23336 5' -56.7 NC_005259.1 + 45645 0.7 0.467384
Target:  5'- cGCCGGUGcCGCCGugaacaccGCcGUCcGCGUAGu -3'
miRNA:   3'- -CGGCCACaGUGGC--------CGcUAGaCGCAUC- -5'
23336 5' -56.7 NC_005259.1 + 36531 0.71 0.448161
Target:  5'- cGCgCGGUGUgACacgcggGGUGAUCUGCGg-- -3'
miRNA:   3'- -CG-GCCACAgUGg-----CCGCUAGACGCauc -5'
23336 5' -56.7 NC_005259.1 + 45306 0.71 0.429384
Target:  5'- cGCCGGUGaCGCCGaggccgccGcCGAaCUGCGUGGc -3'
miRNA:   3'- -CGGCCACaGUGGC--------C-GCUaGACGCAUC- -5'
23336 5' -56.7 NC_005259.1 + 37067 0.71 0.429384
Target:  5'- cGgCGGUGUCcacguccacgcACCGGCGGUg-GUGUAGa -3'
miRNA:   3'- -CgGCCACAG-----------UGGCCGCUAgaCGCAUC- -5'
23336 5' -56.7 NC_005259.1 + 55905 0.71 0.420171
Target:  5'- cGCCGGgGUCGCUGGCcagaccgcuGGUCUGCu--- -3'
miRNA:   3'- -CGGCCaCAGUGGCCG---------CUAGACGcauc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.