miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 13088 0.68 0.840904
Target:  5'- gGCCAuccgguGCcACCGACcCCGGcccgcucggcgGCUACGa -3'
miRNA:   3'- gCGGUu-----CGuUGGCUGuGGCU-----------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 57466 0.68 0.840904
Target:  5'- gCGgCAGGCcGgUGGCACCGGAC-ACGu -3'
miRNA:   3'- -GCgGUUCGuUgGCUGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 56327 0.68 0.840904
Target:  5'- cCGUCGAGCAAuCCGACuuCCu--CUGCGu -3'
miRNA:   3'- -GCGGUUCGUU-GGCUGu-GGcuuGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 8057 0.68 0.813761
Target:  5'- cCGCCGGucGCcGCCGACAUCGAGau-CGu -3'
miRNA:   3'- -GCGGUU--CGuUGGCUGUGGCUUgauGC- -5'
23337 3' -52.4 NC_005259.1 + 51979 0.68 0.813761
Target:  5'- cCGCCAGaauCAucACCGACGCCGAuCU-CGa -3'
miRNA:   3'- -GCGGUUc--GU--UGGCUGUGGCUuGAuGC- -5'
23337 3' -52.4 NC_005259.1 + 4232 0.68 0.801452
Target:  5'- gGCCAAGCAggccccgcccacguGCCucGACugCGAggacaacgggcgGCUGCGc -3'
miRNA:   3'- gCGGUUCGU--------------UGG--CUGugGCU------------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 47988 0.68 0.803366
Target:  5'- uGCCGGGCAgcgcaagACCGGCuugugUGAGCUGCu -3'
miRNA:   3'- gCGGUUCGU-------UGGCUGug---GCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 21119 0.68 0.80432
Target:  5'- aGCCGAGCGACUcaaGACaggaACCGAGgaAUGa -3'
miRNA:   3'- gCGGUUCGUUGG---CUG----UGGCUUgaUGC- -5'
23337 3' -52.4 NC_005259.1 + 35523 0.68 0.80432
Target:  5'- cCGCCGGGCAcaccgcccGCCGuCGCCGAuCcGCc -3'
miRNA:   3'- -GCGGUUCGU--------UGGCuGUGGCUuGaUGc -5'
23337 3' -52.4 NC_005259.1 + 32222 0.68 0.80432
Target:  5'- -aCCGAcGCc-UCGGCACCGAGCUGCu -3'
miRNA:   3'- gcGGUU-CGuuGGCUGUGGCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 64693 0.68 0.80432
Target:  5'- cCGCCGAGCGauACCcacAUACCGAugcaccacgggcACUGCa -3'
miRNA:   3'- -GCGGUUCGU--UGGc--UGUGGCU------------UGAUGc -5'
23337 3' -52.4 NC_005259.1 + 15367 0.68 0.811888
Target:  5'- uCGCCGAucugggcgagcugccGCAACCGugGCCGcGcacucccaagggugcGCUGCGu -3'
miRNA:   3'- -GCGGUU---------------CGUUGGCugUGGC-U---------------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 37718 0.68 0.812825
Target:  5'- uGCCAgacccgaGGC-ACCGcCGCCGAcgaGCUGCu -3'
miRNA:   3'- gCGGU-------UCGuUGGCuGUGGCU---UGAUGc -5'
23337 3' -52.4 NC_005259.1 + 39068 0.68 0.813761
Target:  5'- uGCCGAGCuuGCUGGCGUCGAACa--- -3'
miRNA:   3'- gCGGUUCGu-UGGCUGUGGCUUGaugc -5'
23337 3' -52.4 NC_005259.1 + 1870 0.67 0.865278
Target:  5'- cCGCCGcguuccguaagcaGGCcGCCGAgauCGCgCGAGCUGCc -3'
miRNA:   3'- -GCGGU-------------UCGuUGGCU---GUG-GCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 50133 0.67 0.857094
Target:  5'- cCGCCAcacgcgauugguuGGCGAuCCGGCGCgUGAGCgaGCGg -3'
miRNA:   3'- -GCGGU-------------UCGUU-GGCUGUG-GCUUGa-UGC- -5'
23337 3' -52.4 NC_005259.1 + 3114 0.67 0.85207
Target:  5'- gGCCAuugcgcggcaccgugGGCAGCggaCGGCACCGcccguggGACUACa -3'
miRNA:   3'- gCGGU---------------UCGUUG---GCUGUGGC-------UUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 45950 0.67 0.849527
Target:  5'- -cCCucAGCAcguuGCCGACguuGCCGAGCUugGc -3'
miRNA:   3'- gcGGu-UCGU----UGGCUG---UGGCUUGAugC- -5'
23337 3' -52.4 NC_005259.1 + 4796 0.67 0.849527
Target:  5'- gGCCAGGU-ACUG-C-CCGAGCUGCc -3'
miRNA:   3'- gCGGUUCGuUGGCuGuGGCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 21214 0.67 0.866084
Target:  5'- uGCCGAGCucauCCGA-GCCGAG-UACGc -3'
miRNA:   3'- gCGGUUCGuu--GGCUgUGGCUUgAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.