Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23337 | 3' | -52.4 | NC_005259.1 | + | 33609 | 0.7 | 0.712581 |
Target: 5'- gGUCGAgcuGCAACCGGcCACCGAAacugUUGCGa -3' miRNA: 3'- gCGGUU---CGUUGGCU-GUGGCUU----GAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 23653 | 0.7 | 0.712581 |
Target: 5'- cCGCCGacGGCGacggcuggaccGCCGACcCCGAGCagGCGc -3' miRNA: 3'- -GCGGU--UCGU-----------UGGCUGuGGCUUGa-UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 482 | 0.7 | 0.723242 |
Target: 5'- uGUCAAGUccACCGACGCCacGCUGCu -3' miRNA: 3'- gCGGUUCGu-UGGCUGUGGcuUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 33389 | 0.7 | 0.733812 |
Target: 5'- cCGCCGAGCGcgacgaGCCGugucCACCGcGCgUACGc -3' miRNA: 3'- -GCGGUUCGU------UGGCu---GUGGCuUG-AUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 2011 | 0.7 | 0.74428 |
Target: 5'- gGCCAucggguGGCGcACCGGCACCucAgUGCGg -3' miRNA: 3'- gCGGU------UCGU-UGGCUGUGGcuUgAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 64590 | 0.7 | 0.74428 |
Target: 5'- gGCCAgcacaccaacgaGGUGACUGACGgCGAGCgcgACGg -3' miRNA: 3'- gCGGU------------UCGUUGGCUGUgGCUUGa--UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 5493 | 0.69 | 0.754636 |
Target: 5'- gCGCCGAGCGA---GgAUCGAGCUACGc -3' miRNA: 3'- -GCGGUUCGUUggcUgUGGCUUGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 26439 | 0.69 | 0.754636 |
Target: 5'- cCGCCGAGCGggcggGCCGGuggGCCGAugUggaACGa -3' miRNA: 3'- -GCGGUUCGU-----UGGCUg--UGGCUugA---UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 52270 | 0.69 | 0.764866 |
Target: 5'- gGCCGGGCAgacaggACCGGC-CCGA--UGCGc -3' miRNA: 3'- gCGGUUCGU------UGGCUGuGGCUugAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 2166 | 0.69 | 0.764866 |
Target: 5'- gCGUCGAGCcGCCGguuGCCGAggucaugggccGCUACGg -3' miRNA: 3'- -GCGGUUCGuUGGCug-UGGCU-----------UGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 7332 | 0.69 | 0.764866 |
Target: 5'- uCGCCGAGUAcguCGAgGCCGGACagACGu -3' miRNA: 3'- -GCGGUUCGUug-GCUgUGGCUUGa-UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 45404 | 0.69 | 0.784909 |
Target: 5'- cCGCCGAGCGcGCUGAuggcCGCCGccGCUGCc -3' miRNA: 3'- -GCGGUUCGU-UGGCU----GUGGCu-UGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 26131 | 0.69 | 0.794699 |
Target: 5'- uCGCCGGuccgacGCcGCCGAgGCCGAGCaGCc -3' miRNA: 3'- -GCGGUU------CGuUGGCUgUGGCUUGaUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 12058 | 0.69 | 0.794699 |
Target: 5'- gGCCGAGCucuGCggcaGACACCGAGauggGCa -3' miRNA: 3'- gCGGUUCGu--UGg---CUGUGGCUUga--UGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 4232 | 0.68 | 0.801452 |
Target: 5'- gGCCAAGCAggccccgcccacguGCCucGACugCGAggacaacgggcgGCUGCGc -3' miRNA: 3'- gCGGUUCGU--------------UGG--CUGugGCU------------UGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 47988 | 0.68 | 0.803366 |
Target: 5'- uGCCGGGCAgcgcaagACCGGCuugugUGAGCUGCu -3' miRNA: 3'- gCGGUUCGU-------UGGCUGug---GCUUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 21119 | 0.68 | 0.80432 |
Target: 5'- aGCCGAGCGACUcaaGACaggaACCGAGgaAUGa -3' miRNA: 3'- gCGGUUCGUUGG---CUG----UGGCUUgaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 35523 | 0.68 | 0.80432 |
Target: 5'- cCGCCGGGCAcaccgcccGCCGuCGCCGAuCcGCc -3' miRNA: 3'- -GCGGUUCGU--------UGGCuGUGGCUuGaUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 32222 | 0.68 | 0.80432 |
Target: 5'- -aCCGAcGCc-UCGGCACCGAGCUGCu -3' miRNA: 3'- gcGGUU-CGuuGGCUGUGGCUUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 64693 | 0.68 | 0.80432 |
Target: 5'- cCGCCGAGCGauACCcacAUACCGAugcaccacgggcACUGCa -3' miRNA: 3'- -GCGGUUCGU--UGGc--UGUGGCU------------UGAUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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