miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 43033 0.77 0.34656
Target:  5'- cCGCCGAGCAggccGCCGAgCAgCGAACcgACGg -3'
miRNA:   3'- -GCGGUUCGU----UGGCU-GUgGCUUGa-UGC- -5'
23337 3' -52.4 NC_005259.1 + 42563 0.66 0.903123
Target:  5'- uCGgCGAGCAGCCGGucguCAUCGAuagGCGu -3'
miRNA:   3'- -GCgGUUCGUUGGCU----GUGGCUugaUGC- -5'
23337 3' -52.4 NC_005259.1 + 42517 0.7 0.698607
Target:  5'- gGCCA-GCAGCCGuccggccccgauggGCACCGAGgugGCGg -3'
miRNA:   3'- gCGGUuCGUUGGC--------------UGUGGCUUga-UGC- -5'
23337 3' -52.4 NC_005259.1 + 40664 0.7 0.712581
Target:  5'- uCGCCGAGCAGCgCGAgCGCCuuGgUGCu -3'
miRNA:   3'- -GCGGUUCGUUG-GCU-GUGGcuUgAUGc -5'
23337 3' -52.4 NC_005259.1 + 39068 0.68 0.813761
Target:  5'- uGCCGAGCuuGCUGGCGUCGAACa--- -3'
miRNA:   3'- gCGGUUCGu-UGGCUGUGGCUUGaugc -5'
23337 3' -52.4 NC_005259.1 + 37718 0.68 0.812825
Target:  5'- uGCCAgacccgaGGC-ACCGcCGCCGAcgaGCUGCu -3'
miRNA:   3'- gCGGU-------UCGuUGGCuGUGGCU---UGAUGc -5'
23337 3' -52.4 NC_005259.1 + 37164 0.76 0.398906
Target:  5'- cCGCCGcGCccGCCGACGCCgcgcgaggacGAGCUGCGg -3'
miRNA:   3'- -GCGGUuCGu-UGGCUGUGG----------CUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 35982 0.71 0.680172
Target:  5'- aCGgCGGGaAACCGACggcgagGCCGGACUGCa -3'
miRNA:   3'- -GCgGUUCgUUGGCUG------UGGCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 35865 0.66 0.903123
Target:  5'- cCGCCGcguccaccGCAGCCGcCGCCGAggcagACcACGg -3'
miRNA:   3'- -GCGGUu-------CGUUGGCuGUGGCU-----UGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 35523 0.68 0.80432
Target:  5'- cCGCCGGGCAcaccgcccGCCGuCGCCGAuCcGCc -3'
miRNA:   3'- -GCGGUUCGU--------UGGCuGUGGCUuGaUGc -5'
23337 3' -52.4 NC_005259.1 + 34495 0.66 0.903123
Target:  5'- cCGCCGAcGCGACgaCGAUgucGCCGAcAUUGCGc -3'
miRNA:   3'- -GCGGUU-CGUUG--GCUG---UGGCU-UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 33609 0.7 0.712581
Target:  5'- gGUCGAgcuGCAACCGGcCACCGAAacugUUGCGa -3'
miRNA:   3'- gCGGUU---CGUUGGCU-GUGGCUU----GAUGC- -5'
23337 3' -52.4 NC_005259.1 + 33389 0.7 0.733812
Target:  5'- cCGCCGAGCGcgacgaGCCGugucCACCGcGCgUACGc -3'
miRNA:   3'- -GCGGUUCGU------UGGCu---GUGGCuUG-AUGC- -5'
23337 3' -52.4 NC_005259.1 + 32222 0.68 0.80432
Target:  5'- -aCCGAcGCc-UCGGCACCGAGCUGCu -3'
miRNA:   3'- gcGGUU-CGuuGGCUGUGGCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 30426 0.67 0.866084
Target:  5'- aCGUgAGGCAgcgcgaugaGCCGugGCUGuucAGCUACGu -3'
miRNA:   3'- -GCGgUUCGU---------UGGCugUGGC---UUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 30345 0.66 0.92216
Target:  5'- aGCaCGAGCucACCgugugGACGCCGAuCUGCc -3'
miRNA:   3'- gCG-GUUCGu-UGG-----CUGUGGCUuGAUGc -5'
23337 3' -52.4 NC_005259.1 + 29056 0.66 0.916088
Target:  5'- aGCCGcgAGCGcgguAUCGGC-CCGAuCUGCGc -3'
miRNA:   3'- gCGGU--UCGU----UGGCUGuGGCUuGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 28964 0.68 0.823012
Target:  5'- uCGCCGAGgucgguGCCGAgGCCGcgagcgcccGCUACGg -3'
miRNA:   3'- -GCGGUUCgu----UGGCUgUGGCu--------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 28931 0.66 0.889083
Target:  5'- aGCCAgaAGCAGgCGGCAC-GAucCUGCGc -3'
miRNA:   3'- gCGGU--UCGUUgGCUGUGgCUu-GAUGC- -5'
23337 3' -52.4 NC_005259.1 + 27279 0.71 0.669263
Target:  5'- cCGCCuuGAGCcGCCGcugcacGCGCCGGAC-ACGg -3'
miRNA:   3'- -GCGG--UUCGuUGGC------UGUGGCUUGaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.