miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 27018 0.67 0.88167
Target:  5'- aCGCCGcgccGUAGCUGaACACCuuGAGCUugGc -3'
miRNA:   3'- -GCGGUu---CGUUGGC-UGUGG--CUUGAugC- -5'
23337 3' -52.4 NC_005259.1 + 26616 0.71 0.680172
Target:  5'- gCGCCGgaccGGUAGCCGAUAUCGAugGCcugGCGu -3'
miRNA:   3'- -GCGGU----UCGUUGGCUGUGGCU--UGa--UGC- -5'
23337 3' -52.4 NC_005259.1 + 26439 0.69 0.754636
Target:  5'- cCGCCGAGCGggcggGCCGGuggGCCGAugUggaACGa -3'
miRNA:   3'- -GCGGUUCGU-----UGGCUg--UGGCUugA---UGC- -5'
23337 3' -52.4 NC_005259.1 + 26385 0.72 0.592501
Target:  5'- aGCCuguugcucGCGAuuCCGACGCCGGGCgcgGCGg -3'
miRNA:   3'- gCGGuu------CGUU--GGCUGUGGCUUGa--UGC- -5'
23337 3' -52.4 NC_005259.1 + 26131 0.69 0.794699
Target:  5'- uCGCCGGuccgacGCcGCCGAgGCCGAGCaGCc -3'
miRNA:   3'- -GCGGUU------CGuUGGCUgUGGCUUGaUGc -5'
23337 3' -52.4 NC_005259.1 + 26070 0.71 0.647352
Target:  5'- cCGCCGAGCAgucccccgagGCCGcCGCCGAGaagACc -3'
miRNA:   3'- -GCGGUUCGU----------UGGCuGUGGCUUga-UGc -5'
23337 3' -52.4 NC_005259.1 + 24352 0.67 0.88167
Target:  5'- cCGCCGGGUGcUCGcACACCGAggucugguggcGCUACc -3'
miRNA:   3'- -GCGGUUCGUuGGC-UGUGGCU-----------UGAUGc -5'
23337 3' -52.4 NC_005259.1 + 23653 0.7 0.712581
Target:  5'- cCGCCGacGGCGacggcuggaccGCCGACcCCGAGCagGCGc -3'
miRNA:   3'- -GCGGU--UCGU-----------UGGCUGuGGCUUGa-UGC- -5'
23337 3' -52.4 NC_005259.1 + 23473 0.68 0.823012
Target:  5'- gGCCucGGCAuugucgguGCCGACgccaugaccaagGCCGAGCUcaGCGa -3'
miRNA:   3'- gCGGu-UCGU--------UGGCUG------------UGGCUUGA--UGC- -5'
23337 3' -52.4 NC_005259.1 + 22557 0.68 0.832063
Target:  5'- uCGCCGAGgucauggaAGCCGcCACCGAG-UACGu -3'
miRNA:   3'- -GCGGUUCg-------UUGGCuGUGGCUUgAUGC- -5'
23337 3' -52.4 NC_005259.1 + 21279 0.66 0.903123
Target:  5'- gGCCugacGAGCAgGCCGAUgagGCCGAACg--- -3'
miRNA:   3'- gCGG----UUCGU-UGGCUG---UGGCUUGaugc -5'
23337 3' -52.4 NC_005259.1 + 21214 0.67 0.866084
Target:  5'- uGCCGAGCucauCCGA-GCCGAG-UACGc -3'
miRNA:   3'- gCGGUUCGuu--GGCUgUGGCUUgAUGC- -5'
23337 3' -52.4 NC_005259.1 + 21119 0.68 0.80432
Target:  5'- aGCCGAGCGACUcaaGACaggaACCGAGgaAUGa -3'
miRNA:   3'- gCGGUUCGUUGG---CUG----UGGCUUgaUGC- -5'
23337 3' -52.4 NC_005259.1 + 20290 0.66 0.903123
Target:  5'- gCGCUAccGCGAguuCUGGuCGCCGAGCUACu -3'
miRNA:   3'- -GCGGUu-CGUU---GGCU-GUGGCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 19874 0.74 0.50685
Target:  5'- cCGCCGGGaucGCCGACGCCgcgcccaaGAugUGCGa -3'
miRNA:   3'- -GCGGUUCgu-UGGCUGUGG--------CUugAUGC- -5'
23337 3' -52.4 NC_005259.1 + 18584 0.74 0.486218
Target:  5'- -cCCGAGCAGaCCGACcCCGAuguCUACGa -3'
miRNA:   3'- gcGGUUCGUU-GGCUGuGGCUu--GAUGC- -5'
23337 3' -52.4 NC_005259.1 + 18477 0.75 0.446212
Target:  5'- aGCCGuGC--CCGACGCCGAcgaGCUACGc -3'
miRNA:   3'- gCGGUuCGuuGGCUGUGGCU---UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 18311 0.71 0.669263
Target:  5'- uGCCcGGUGugCGACACCGAggccGgUGCGu -3'
miRNA:   3'- gCGGuUCGUugGCUGUGGCU----UgAUGC- -5'
23337 3' -52.4 NC_005259.1 + 17964 0.66 0.896236
Target:  5'- aCGCCAccGCAcaCGACA-CGGGCUGCGc -3'
miRNA:   3'- -GCGGUu-CGUugGCUGUgGCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 17771 0.73 0.527847
Target:  5'- gCGCCGGGcCGAgCG-CACCGAGCgUGCGc -3'
miRNA:   3'- -GCGGUUC-GUUgGCuGUGGCUUG-AUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.