miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 5219 0.76 0.398906
Target:  5'- uCGCCGAGCAAuaccCCGACGCUGAGau-CGa -3'
miRNA:   3'- -GCGGUUCGUU----GGCUGUGGCUUgauGC- -5'
23337 3' -52.4 NC_005259.1 + 43033 0.77 0.34656
Target:  5'- cCGCCGAGCAggccGCCGAgCAgCGAACcgACGg -3'
miRNA:   3'- -GCGGUUCGU----UGGCU-GUgGCUUGa-UGC- -5'
23337 3' -52.4 NC_005259.1 + 6099 0.77 0.34573
Target:  5'- aCGCCGAGaucGCCGAgGCCGAggccgccGCUACGc -3'
miRNA:   3'- -GCGGUUCgu-UGGCUgUGGCU-------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 4977 0.77 0.338328
Target:  5'- cCGCCGAGUucGGCCGAUgGCCGGgcACUACGg -3'
miRNA:   3'- -GCGGUUCG--UUGGCUG-UGGCU--UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 45314 0.83 0.163873
Target:  5'- aCGCCGAG--GCCGcCGCCGAACUGCGu -3'
miRNA:   3'- -GCGGUUCguUGGCuGUGGCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 46771 0.74 0.50062
Target:  5'- gCGCCGA-CAGCCGcgcccgccgggccgaACACCGAGcCUGCGa -3'
miRNA:   3'- -GCGGUUcGUUGGC---------------UGUGGCUU-GAUGC- -5'
23337 3' -52.4 NC_005259.1 + 19874 0.74 0.50685
Target:  5'- cCGCCGGGaucGCCGACGCCgcgcccaaGAugUGCGa -3'
miRNA:   3'- -GCGGUUCgu-UGGCUGUGG--------CUugAUGC- -5'
23337 3' -52.4 NC_005259.1 + 14544 0.71 0.669263
Target:  5'- uGCCGAGUucguCCGGCagGCCGAGCggggaccgGCGa -3'
miRNA:   3'- gCGGUUCGuu--GGCUG--UGGCUUGa-------UGC- -5'
23337 3' -52.4 NC_005259.1 + 58970 0.71 0.66817
Target:  5'- gGUCGGGCAGCucgucggCGACGgCGAGCUugGc -3'
miRNA:   3'- gCGGUUCGUUG-------GCUGUgGCUUGAugC- -5'
23337 3' -52.4 NC_005259.1 + 12234 0.71 0.65832
Target:  5'- gGCCGGGCAAUgGucACACCGc-CUGCGa -3'
miRNA:   3'- gCGGUUCGUUGgC--UGUGGCuuGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 26070 0.71 0.647352
Target:  5'- cCGCCGAGCAgucccccgagGCCGcCGCCGAGaagACc -3'
miRNA:   3'- -GCGGUUCGU----------UGGCuGUGGCUUga-UGc -5'
23337 3' -52.4 NC_005259.1 + 65988 0.71 0.646254
Target:  5'- gCGCCGAGCAGCCGcucgacguggugcGCACCcucgGGGCcGCa -3'
miRNA:   3'- -GCGGUUCGUUGGC-------------UGUGG----CUUGaUGc -5'
23337 3' -52.4 NC_005259.1 + 43468 0.71 0.63637
Target:  5'- uCGUUGAGCAACCGGCcCUGAGCgucgaACGc -3'
miRNA:   3'- -GCGGUUCGUUGGCUGuGGCUUGa----UGC- -5'
23337 3' -52.4 NC_005259.1 + 15584 0.72 0.603441
Target:  5'- gGCCAGcGCGACgGGcCGCaUGAGCUACGg -3'
miRNA:   3'- gCGGUU-CGUUGgCU-GUG-GCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 7190 0.72 0.603441
Target:  5'- uGCCcGGCcuGCgGacGCACCGGGCUGCGg -3'
miRNA:   3'- gCGGuUCGu-UGgC--UGUGGCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 26385 0.72 0.592501
Target:  5'- aGCCuguugcucGCGAuuCCGACGCCGGGCgcgGCGg -3'
miRNA:   3'- gCGGuu------CGUU--GGCUGUGGCUUGa--UGC- -5'
23337 3' -52.4 NC_005259.1 + 46908 0.73 0.538466
Target:  5'- cCGCCGAGCAGuCCGcgugcgcCGCCGAGCUuGCc -3'
miRNA:   3'- -GCGGUUCGUU-GGCu------GUGGCUUGA-UGc -5'
23337 3' -52.4 NC_005259.1 + 5710 0.73 0.538466
Target:  5'- cCGCCAAG--GCCaGCGCCGGACgGCGg -3'
miRNA:   3'- -GCGGUUCguUGGcUGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 17771 0.73 0.527847
Target:  5'- gCGCCGGGcCGAgCG-CACCGAGCgUGCGc -3'
miRNA:   3'- -GCGGUUC-GUUgGCuGUGGCUUG-AUGC- -5'
23337 3' -52.4 NC_005259.1 + 47282 0.74 0.50685
Target:  5'- -aCCGAGCAgaccGCCGuCGCCGGACaGCGa -3'
miRNA:   3'- gcGGUUCGU----UGGCuGUGGCUUGaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.