miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 3' -52.4 NC_005259.1 + 482 0.7 0.723242
Target:  5'- uGUCAAGUccACCGACGCCacGCUGCu -3'
miRNA:   3'- gCGGUUCGu-UGGCUGUGGcuUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 33389 0.7 0.733812
Target:  5'- cCGCCGAGCGcgacgaGCCGugucCACCGcGCgUACGc -3'
miRNA:   3'- -GCGGUUCGU------UGGCu---GUGGCuUG-AUGC- -5'
23337 3' -52.4 NC_005259.1 + 64590 0.7 0.74428
Target:  5'- gGCCAgcacaccaacgaGGUGACUGACGgCGAGCgcgACGg -3'
miRNA:   3'- gCGGU------------UCGUUGGCUGUgGCUUGa--UGC- -5'
23337 3' -52.4 NC_005259.1 + 2011 0.7 0.74428
Target:  5'- gGCCAucggguGGCGcACCGGCACCucAgUGCGg -3'
miRNA:   3'- gCGGU------UCGU-UGGCUGUGGcuUgAUGC- -5'
23337 3' -52.4 NC_005259.1 + 5493 0.69 0.754636
Target:  5'- gCGCCGAGCGA---GgAUCGAGCUACGc -3'
miRNA:   3'- -GCGGUUCGUUggcUgUGGCUUGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 26439 0.69 0.754636
Target:  5'- cCGCCGAGCGggcggGCCGGuggGCCGAugUggaACGa -3'
miRNA:   3'- -GCGGUUCGU-----UGGCUg--UGGCUugA---UGC- -5'
23337 3' -52.4 NC_005259.1 + 52270 0.69 0.764866
Target:  5'- gGCCGGGCAgacaggACCGGC-CCGA--UGCGc -3'
miRNA:   3'- gCGGUUCGU------UGGCUGuGGCUugAUGC- -5'
23337 3' -52.4 NC_005259.1 + 17350 0.7 0.701842
Target:  5'- uCGCCGucgaggucGGCGGCuCGGCGCUGGucguggucgACUGCGa -3'
miRNA:   3'- -GCGGU--------UCGUUG-GCUGUGGCU---------UGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 66246 0.7 0.701842
Target:  5'- aGCCAucgacgcagcGCGGCCcGCGCCGGGCgGCGg -3'
miRNA:   3'- gCGGUu---------CGUUGGcUGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 42517 0.7 0.698607
Target:  5'- gGCCA-GCAGCCGuccggccccgauggGCACCGAGgugGCGg -3'
miRNA:   3'- gCGGUuCGUUGGC--------------UGUGGCUUga-UGC- -5'
23337 3' -52.4 NC_005259.1 + 12234 0.71 0.65832
Target:  5'- gGCCGGGCAAUgGucACACCGc-CUGCGa -3'
miRNA:   3'- gCGGUUCGUUGgC--UGUGGCuuGAUGC- -5'
23337 3' -52.4 NC_005259.1 + 58970 0.71 0.66817
Target:  5'- gGUCGGGCAGCucgucggCGACGgCGAGCUugGc -3'
miRNA:   3'- gCGGUUCGUUG-------GCUGUgGCUUGAugC- -5'
23337 3' -52.4 NC_005259.1 + 14544 0.71 0.669263
Target:  5'- uGCCGAGUucguCCGGCagGCCGAGCggggaccgGCGa -3'
miRNA:   3'- gCGGUUCGuu--GGCUG--UGGCUUGa-------UGC- -5'
23337 3' -52.4 NC_005259.1 + 18311 0.71 0.669263
Target:  5'- uGCCcGGUGugCGACACCGAggccGgUGCGu -3'
miRNA:   3'- gCGGuUCGUugGCUGUGGCU----UgAUGC- -5'
23337 3' -52.4 NC_005259.1 + 27279 0.71 0.669263
Target:  5'- cCGCCuuGAGCcGCCGcugcacGCGCCGGAC-ACGg -3'
miRNA:   3'- -GCGG--UUCGuUGGC------UGUGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 50404 0.71 0.679083
Target:  5'- uCGCCGAGCGcgccggugccuugACCGGC-UCGGGCaGCGg -3'
miRNA:   3'- -GCGGUUCGU-------------UGGCUGuGGCUUGaUGC- -5'
23337 3' -52.4 NC_005259.1 + 26616 0.71 0.680172
Target:  5'- gCGCCGgaccGGUAGCCGAUAUCGAugGCcugGCGu -3'
miRNA:   3'- -GCGGU----UCGUUGGCUGUGGCU--UGa--UGC- -5'
23337 3' -52.4 NC_005259.1 + 35982 0.71 0.680172
Target:  5'- aCGgCGGGaAACCGACggcgagGCCGGACUGCa -3'
miRNA:   3'- -GCgGUUCgUUGGCUG------UGGCUUGAUGc -5'
23337 3' -52.4 NC_005259.1 + 43783 0.7 0.691036
Target:  5'- uCGCCGGGCAugagcagcGCgGGCACCGAGuccUUGCc -3'
miRNA:   3'- -GCGGUUCGU--------UGgCUGUGGCUU---GAUGc -5'
23337 3' -52.4 NC_005259.1 + 63427 0.7 0.691036
Target:  5'- uGCCGAGCAGCCG-C-UCGGGCgagACa -3'
miRNA:   3'- gCGGUUCGUUGGCuGuGGCUUGa--UGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.