Results 101 - 120 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23337 | 3' | -52.4 | NC_005259.1 | + | 4232 | 0.68 | 0.801452 |
Target: 5'- gGCCAAGCAggccccgcccacguGCCucGACugCGAggacaacgggcgGCUGCGc -3' miRNA: 3'- gCGGUUCGU--------------UGG--CUGugGCU------------UGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 47988 | 0.68 | 0.803366 |
Target: 5'- uGCCGGGCAgcgcaagACCGGCuugugUGAGCUGCu -3' miRNA: 3'- gCGGUUCGU-------UGGCUGug---GCUUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 21119 | 0.68 | 0.80432 |
Target: 5'- aGCCGAGCGACUcaaGACaggaACCGAGgaAUGa -3' miRNA: 3'- gCGGUUCGUUGG---CUG----UGGCUUgaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 35523 | 0.68 | 0.80432 |
Target: 5'- cCGCCGGGCAcaccgcccGCCGuCGCCGAuCcGCc -3' miRNA: 3'- -GCGGUUCGU--------UGGCuGUGGCUuGaUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 32222 | 0.68 | 0.80432 |
Target: 5'- -aCCGAcGCc-UCGGCACCGAGCUGCu -3' miRNA: 3'- gcGGUU-CGuuGGCUGUGGCUUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 2011 | 0.7 | 0.74428 |
Target: 5'- gGCCAucggguGGCGcACCGGCACCucAgUGCGg -3' miRNA: 3'- gCGGU------UCGU-UGGCUGUGGcuUgAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 64590 | 0.7 | 0.74428 |
Target: 5'- gGCCAgcacaccaacgaGGUGACUGACGgCGAGCgcgACGg -3' miRNA: 3'- gCGGU------------UCGUUGGCUGUgGCUUGa--UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 50404 | 0.71 | 0.679083 |
Target: 5'- uCGCCGAGCGcgccggugccuugACCGGC-UCGGGCaGCGg -3' miRNA: 3'- -GCGGUUCGU-------------UGGCUGuGGCUUGaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 26616 | 0.71 | 0.680172 |
Target: 5'- gCGCCGgaccGGUAGCCGAUAUCGAugGCcugGCGu -3' miRNA: 3'- -GCGGU----UCGUUGGCUGUGGCU--UGa--UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 35982 | 0.71 | 0.680172 |
Target: 5'- aCGgCGGGaAACCGACggcgagGCCGGACUGCa -3' miRNA: 3'- -GCgGUUCgUUGGCUG------UGGCUUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 43783 | 0.7 | 0.691036 |
Target: 5'- uCGCCGGGCAugagcagcGCgGGCACCGAGuccUUGCc -3' miRNA: 3'- -GCGGUUCGU--------UGgCUGUGGCUU---GAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 63427 | 0.7 | 0.691036 |
Target: 5'- uGCCGAGCAGCCG-C-UCGGGCgagACa -3' miRNA: 3'- gCGGUUCGUUGGCuGuGGCUUGa--UGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 42517 | 0.7 | 0.698607 |
Target: 5'- gGCCA-GCAGCCGuccggccccgauggGCACCGAGgugGCGg -3' miRNA: 3'- gCGGUuCGUUGGC--------------UGUGGCUUga-UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 66246 | 0.7 | 0.701842 |
Target: 5'- aGCCAucgacgcagcGCGGCCcGCGCCGGGCgGCGg -3' miRNA: 3'- gCGGUu---------CGUUGGcUGUGGCUUGaUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 17350 | 0.7 | 0.701842 |
Target: 5'- uCGCCGucgaggucGGCGGCuCGGCGCUGGucguggucgACUGCGa -3' miRNA: 3'- -GCGGU--------UCGUUG-GCUGUGGCU---------UGAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 40664 | 0.7 | 0.712581 |
Target: 5'- uCGCCGAGCAGCgCGAgCGCCuuGgUGCu -3' miRNA: 3'- -GCGGUUCGUUG-GCU-GUGGcuUgAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 33609 | 0.7 | 0.712581 |
Target: 5'- gGUCGAgcuGCAACCGGcCACCGAAacugUUGCGa -3' miRNA: 3'- gCGGUU---CGUUGGCU-GUGGCUU----GAUGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 23653 | 0.7 | 0.712581 |
Target: 5'- cCGCCGacGGCGacggcuggaccGCCGACcCCGAGCagGCGc -3' miRNA: 3'- -GCGGU--UCGU-----------UGGCUGuGGCUUGa-UGC- -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 482 | 0.7 | 0.723242 |
Target: 5'- uGUCAAGUccACCGACGCCacGCUGCu -3' miRNA: 3'- gCGGUUCGu-UGGCUGUGGcuUGAUGc -5' |
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23337 | 3' | -52.4 | NC_005259.1 | + | 33389 | 0.7 | 0.733812 |
Target: 5'- cCGCCGAGCGcgacgaGCCGugucCACCGcGCgUACGc -3' miRNA: 3'- -GCGGUUCGU------UGGCu---GUGGCuUG-AUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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