miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 5' -65.6 NC_005259.1 + 41404 0.71 0.132579
Target:  5'- gCGCGcCGCUCGGGGUgcccacgaugugcaCGGGCCGCCa-- -3'
miRNA:   3'- -GCGC-GCGGGCUCCA--------------GCUCGGCGGgca -5'
23337 5' -65.6 NC_005259.1 + 43264 0.66 0.30476
Target:  5'- cCGgGUGCCUGAGaGUUGAccGCagCGCCCGc -3'
miRNA:   3'- -GCgCGCGGGCUC-CAGCU--CG--GCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 45095 0.71 0.133595
Target:  5'- aGCGUGCCCGuguagccGGUCGGGCCGagaguggugCCGa -3'
miRNA:   3'- gCGCGCGGGCu------CCAGCUCGGCg--------GGCa -5'
23337 5' -65.6 NC_005259.1 + 45746 0.69 0.185066
Target:  5'- cCGCGCaccGCCuCGGGGaUGAGCaCGCCCu- -3'
miRNA:   3'- -GCGCG---CGG-GCUCCaGCUCG-GCGGGca -5'
23337 5' -65.6 NC_005259.1 + 46586 0.75 0.067992
Target:  5'- cCGCGcCGCCCGAGG-CGAGCaGCgCGUc -3'
miRNA:   3'- -GCGC-GCGGGCUCCaGCUCGgCGgGCA- -5'
23337 5' -65.6 NC_005259.1 + 46837 0.7 0.167595
Target:  5'- --aGCGCCCc-GG-CGAGCUGCCCGa -3'
miRNA:   3'- gcgCGCGGGcuCCaGCUCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 48468 0.69 0.209148
Target:  5'- cCGCGCGCC--GGGUCGcGUCGgCCUGUu -3'
miRNA:   3'- -GCGCGCGGgcUCCAGCuCGGC-GGGCA- -5'
23337 5' -65.6 NC_005259.1 + 49074 0.67 0.24736
Target:  5'- gGCGCaagggaucGCUCGAGGgugucauGGCCGCCCGc -3'
miRNA:   3'- gCGCG--------CGGGCUCCagc----UCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 50101 0.7 0.155477
Target:  5'- gGUGCGCCCGAGGU-----UGCCCGUa -3'
miRNA:   3'- gCGCGCGGGCUCCAgcucgGCGGGCA- -5'
23337 5' -65.6 NC_005259.1 + 52039 0.66 0.30476
Target:  5'- uGCGCGCUgucgccguCGAGGaucgCGAcGCCGUCCu- -3'
miRNA:   3'- gCGCGCGG--------GCUCCa---GCU-CGGCGGGca -5'
23337 5' -65.6 NC_005259.1 + 53155 0.67 0.24736
Target:  5'- aGC-CGCuacgCCGAGGcCGAucucgccaccGCCGCCCGUc -3'
miRNA:   3'- gCGcGCG----GGCUCCaGCU----------CGGCGGGCA- -5'
23337 5' -65.6 NC_005259.1 + 53226 0.67 0.265433
Target:  5'- cCGCGCccuGCuuGAGGuUCGcGCCGCCg-- -3'
miRNA:   3'- -GCGCG---CGggCUCC-AGCuCGGCGGgca -5'
23337 5' -65.6 NC_005259.1 + 55615 0.66 0.291173
Target:  5'- uCGCGCGCCUuggccGGGaUCaGGGCCuguagacgaGCCCGUg -3'
miRNA:   3'- -GCGCGCGGGc----UCC-AG-CUCGG---------CGGGCA- -5'
23337 5' -65.6 NC_005259.1 + 55764 0.66 0.318828
Target:  5'- uGCGCaGCCgCGuacGcGUCGAGCUcgGCCCGc -3'
miRNA:   3'- gCGCG-CGG-GCu--C-CAGCUCGG--CGGGCa -5'
23337 5' -65.6 NC_005259.1 + 56985 0.7 0.176138
Target:  5'- ----aGCCUGAGGaUCuGAGCUGCCCGUg -3'
miRNA:   3'- gcgcgCGGGCUCC-AG-CUCGGCGGGCA- -5'
23337 5' -65.6 NC_005259.1 + 57786 0.69 0.199206
Target:  5'- uGCGCGUCgGAGacGUUGAagaccucgacGCCGCCCGc -3'
miRNA:   3'- gCGCGCGGgCUC--CAGCU----------CGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 62822 0.67 0.24736
Target:  5'- aGCGCcgcuuGCCCgcGAGGUCGAG-CGCgCGg -3'
miRNA:   3'- gCGCG-----CGGG--CUCCAGCUCgGCGgGCa -5'
23337 5' -65.6 NC_005259.1 + 64018 0.68 0.219516
Target:  5'- -cCGCGCCCGAGGcgcggCGAGgCCGgugaCCGg -3'
miRNA:   3'- gcGCGCGGGCUCCa----GCUC-GGCg---GGCa -5'
23337 5' -65.6 NC_005259.1 + 64113 0.67 0.280001
Target:  5'- cCGCGCGCuuGAucaaugccgccugacCGAGCgGCCCGUc -3'
miRNA:   3'- -GCGCGCGggCUcca------------GCUCGgCGGGCA- -5'
23337 5' -65.6 NC_005259.1 + 66813 0.66 0.304069
Target:  5'- uGCGUGCCCugccGGucUCGAaacucuggcucauGCCGCCCGc -3'
miRNA:   3'- gCGCGCGGGcu--CC--AGCU-------------CGGCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.