miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23337 5' -65.6 NC_005259.1 + 40559 0.66 0.30476
Target:  5'- aCGCGCGCCCGcgcGGuGUUGcugucGGCgGCUCGc -3'
miRNA:   3'- -GCGCGCGGGC---UC-CAGC-----UCGgCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 37552 0.67 0.259292
Target:  5'- uGCGUgugguGUCCGAuGUCGAcugcucGCCGCCCGc -3'
miRNA:   3'- gCGCG-----CGGGCUcCAGCU------CGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 37396 0.68 0.214278
Target:  5'- cCGCGcCGCCCaugguGuuGUUGAcGCCGCCCGc -3'
miRNA:   3'- -GCGC-GCGGG-----CucCAGCU-CGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 37179 0.66 0.318828
Target:  5'- aCGC-CGCgCGAGGaCGAGCUgcgGCCCu- -3'
miRNA:   3'- -GCGcGCGgGCUCCaGCUCGG---CGGGca -5'
23337 5' -65.6 NC_005259.1 + 37009 0.66 0.325316
Target:  5'- cCGCGCGCCCGccGGGgaacaugacaaugUCGAucuuGgUGCCCGc -3'
miRNA:   3'- -GCGCGCGGGC--UCC-------------AGCU----CgGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 36629 0.69 0.209148
Target:  5'- cCGCGcCGCCCGcaAGGcccgcgaucagCGAGCCGCCg-- -3'
miRNA:   3'- -GCGC-GCGGGC--UCCa----------GCUCGGCGGgca -5'
23337 5' -65.6 NC_005259.1 + 36435 0.67 0.265433
Target:  5'- gCGCaGCGUcgCCGAGGUCGA-CCGCgUCGa -3'
miRNA:   3'- -GCG-CGCG--GGCUCCAGCUcGGCG-GGCa -5'
23337 5' -65.6 NC_005259.1 + 35692 0.66 0.311031
Target:  5'- aCGcCGUGCCCGgcgagGGGUCGcugacgaGGuauCCGCCCGa -3'
miRNA:   3'- -GC-GCGCGGGC-----UCCAGC-------UC---GGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 34887 0.67 0.259292
Target:  5'- gGgGUGCCuCGggcAGGaCGGGCCGCUCGg -3'
miRNA:   3'- gCgCGCGG-GC---UCCaGCUCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 33590 0.68 0.230318
Target:  5'- uCGCGgGCCacCGAggcgcGGUCGAGCUGCaaCCGg -3'
miRNA:   3'- -GCGCgCGG--GCU-----CCAGCUCGGCG--GGCa -5'
23337 5' -65.6 NC_005259.1 + 33109 0.67 0.24736
Target:  5'- aGCGUGCCUGuAGGgccacgCGgcAGCCGCCgCGc -3'
miRNA:   3'- gCGCGCGGGC-UCCa-----GC--UCGGCGG-GCa -5'
23337 5' -65.6 NC_005259.1 + 32875 0.69 0.189212
Target:  5'- aCGCGCGCggugaucgauucaCCGGGGgcgagggUGAGCCaCCCGg -3'
miRNA:   3'- -GCGCGCG-------------GGCUCCa------GCUCGGcGGGCa -5'
23337 5' -65.6 NC_005259.1 + 32782 0.67 0.287191
Target:  5'- uGCGUggcacccgagucguaGCCCGAGGUCGAucccgacgcaccGCCGUCg-- -3'
miRNA:   3'- gCGCG---------------CGGGCUCCAGCU------------CGGCGGgca -5'
23337 5' -65.6 NC_005259.1 + 31411 0.68 0.230318
Target:  5'- aGCGC-CCCGAGGUC--GCCGCUg-- -3'
miRNA:   3'- gCGCGcGGGCUCCAGcuCGGCGGgca -5'
23337 5' -65.6 NC_005259.1 + 31093 0.68 0.219516
Target:  5'- aGCGCGUCgGGGaucaGUCcgauGAGUCGCCCGa -3'
miRNA:   3'- gCGCGCGGgCUC----CAG----CUCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 30830 0.66 0.326043
Target:  5'- gGCGCG-CCGAGGUCG-GCaaCCUGc -3'
miRNA:   3'- gCGCGCgGGCUCCAGCuCGgcGGGCa -5'
23337 5' -65.6 NC_005259.1 + 29875 0.66 0.314557
Target:  5'- uGCcacCGCCCGAugucgaGGUCGgcaagcacaagggguGGCUGCCCGa -3'
miRNA:   3'- gCGc--GCGGGCU------CCAGC---------------UCGGCGGGCa -5'
23337 5' -65.6 NC_005259.1 + 28955 0.67 0.253268
Target:  5'- uGCGcCGCaucgCCGAGGUCGGuGCCgaggccgcgagcGCCCGc -3'
miRNA:   3'- gCGC-GCG----GGCUCCAGCU-CGG------------CGGGCa -5'
23337 5' -65.6 NC_005259.1 + 28749 0.66 0.326043
Target:  5'- -aCGCGCCCGAGcGUgaGAucGUCGCCgGUg -3'
miRNA:   3'- gcGCGCGGGCUC-CAg-CU--CGGCGGgCA- -5'
23337 5' -65.6 NC_005259.1 + 26344 0.67 0.28456
Target:  5'- aGCaCGCCCucGGGcCGAGCUGCgCGUa -3'
miRNA:   3'- gCGcGCGGGc-UCCaGCUCGGCGgGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.