Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23338 | 3' | -53.6 | NC_005259.1 | + | 4208 | 1.11 | 0.001362 |
Target: 5'- cGACACGCUCAUCGAGAUCGAGCAGGCc -3' miRNA: 3'- -CUGUGCGAGUAGCUCUAGCUCGUCCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 19665 | 0.81 | 0.165844 |
Target: 5'- gGGCAgcCGCUaCAuccccggucaggUCGGGAUCGAGCAGGCu -3' miRNA: 3'- -CUGU--GCGA-GU------------AGCUCUAGCUCGUCCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 53604 | 0.8 | 0.189814 |
Target: 5'- ---uUGCUCGUCGGGGUC-AGCAGGCg -3' miRNA: 3'- cuguGCGAGUAGCUCUAGcUCGUCCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 59115 | 0.77 | 0.273528 |
Target: 5'- aGCACGCgcggCAUCGAGcagagcGUCGAGCucGGCa -3' miRNA: 3'- cUGUGCGa---GUAGCUC------UAGCUCGu-CCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 42366 | 0.77 | 0.294931 |
Target: 5'- aGACAUGaUCGUUGAGGaaggCGGGCAGGCc -3' miRNA: 3'- -CUGUGCgAGUAGCUCUa---GCUCGUCCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 6001 | 0.73 | 0.449945 |
Target: 5'- --aACGCUCAuccgcgUCGAGAUCGAGCucgauGaGCg -3' miRNA: 3'- cugUGCGAGU------AGCUCUAGCUCGu----C-CG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 29553 | 0.71 | 0.553095 |
Target: 5'- uGACGCGCUUAgCGAuGAguucgcUGAGCAGGUc -3' miRNA: 3'- -CUGUGCGAGUaGCU-CUa-----GCUCGUCCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 44927 | 0.71 | 0.579017 |
Target: 5'- uACGCGCUgAUCGGGuccauggcaccagCGGGCAGuGCg -3' miRNA: 3'- cUGUGCGAgUAGCUCua-----------GCUCGUC-CG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 1578 | 0.71 | 0.585542 |
Target: 5'- aGCGCGCcccaCAcCGAGGUCGAGgucaGGGCa -3' miRNA: 3'- cUGUGCGa---GUaGCUCUAGCUCg---UCCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 29683 | 0.7 | 0.607379 |
Target: 5'- gGACGCGCcgcaAUCGAGAcCGAuGCcgAGGCa -3' miRNA: 3'- -CUGUGCGag--UAGCUCUaGCU-CG--UCCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 21268 | 0.7 | 0.618334 |
Target: 5'- -cCAUGgUCGUCGGccuGA-CGAGCAGGCc -3' miRNA: 3'- cuGUGCgAGUAGCU---CUaGCUCGUCCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 4427 | 0.7 | 0.639174 |
Target: 5'- cGCGCGCc---CGAGGUCGAGCcgcccgugcgaguGGGCa -3' miRNA: 3'- cUGUGCGaguaGCUCUAGCUCG-------------UCCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 62822 | 0.69 | 0.662178 |
Target: 5'- aGCGcCGCUUGcccgCGAGGUCGAGCGcGCg -3' miRNA: 3'- cUGU-GCGAGUa---GCUCUAGCUCGUcCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 17346 | 0.69 | 0.673095 |
Target: 5'- aACGuCGC-CGUCGAGGUCGgcGGCucGGCg -3' miRNA: 3'- cUGU-GCGaGUAGCUCUAGC--UCGu-CCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 18661 | 0.69 | 0.677451 |
Target: 5'- cGAUAUGCcgccgcccgaguacgUCAUCGAGGgucugcUUGAGCAcGGCg -3' miRNA: 3'- -CUGUGCG---------------AGUAGCUCU------AGCUCGU-CCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 1326 | 0.69 | 0.694803 |
Target: 5'- -cCAUGgUCGauuUCGAGAUCGAGCGcaacGGUg -3' miRNA: 3'- cuGUGCgAGU---AGCUCUAGCUCGU----CCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 23019 | 0.69 | 0.699118 |
Target: 5'- cGGCuCGgUCAUCGAGAUCGAacccgacgacgagcuGCccGGCg -3' miRNA: 3'- -CUGuGCgAGUAGCUCUAGCU---------------CGu-CCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 39040 | 0.69 | 0.702348 |
Target: 5'- uGCGCGaUCAUCGGGAUguuggcgauguugcCGAGCuugcuGGCg -3' miRNA: 3'- cUGUGCgAGUAGCUCUA--------------GCUCGu----CCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 66173 | 0.69 | 0.716269 |
Target: 5'- cGCAUGCUCAUCGGcaccgcugccGGUgcaguaCGGGuCAGGCg -3' miRNA: 3'- cUGUGCGAGUAGCU----------CUA------GCUC-GUCCG- -5' |
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23338 | 3' | -53.6 | NC_005259.1 | + | 14226 | 0.69 | 0.716269 |
Target: 5'- cGGCGCGCgUCGUgCGu-AUCGGGcCGGGCa -3' miRNA: 3'- -CUGUGCG-AGUA-GCucUAGCUC-GUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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