miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23338 3' -53.6 NC_005259.1 + 41477 0.68 0.737406
Target:  5'- cGugACGC-CGUCGAGcacgaccUCGgcgguGGCGGGCa -3'
miRNA:   3'- -CugUGCGaGUAGCUCu------AGC-----UCGUCCG- -5'
23338 3' -53.6 NC_005259.1 + 58974 0.68 0.737406
Target:  5'- gGGCA-GCUCGUCGGcGAcggCGAGCuuGGCc -3'
miRNA:   3'- -CUGUgCGAGUAGCU-CUa--GCUCGu-CCG- -5'
23338 3' -53.6 NC_005259.1 + 2120 0.68 0.737406
Target:  5'- cACACGCUCGcCGAGGUCacGCAGacccGCa -3'
miRNA:   3'- cUGUGCGAGUaGCUCUAGcuCGUC----CG- -5'
23338 3' -53.6 NC_005259.1 + 68278 0.68 0.767282
Target:  5'- aGGCAccguccuCGCcccauaCAUCGGGAUCGGGCGcguccGGCg -3'
miRNA:   3'- -CUGU-------GCGa-----GUAGCUCUAGCUCGU-----CCG- -5'
23338 3' -53.6 NC_005259.1 + 8741 0.67 0.778325
Target:  5'- aGGCAgucaGCcCGUCGAGGUCGAGgCccuuGGCc -3'
miRNA:   3'- -CUGUg---CGaGUAGCUCUAGCUC-Gu---CCG- -5'
23338 3' -53.6 NC_005259.1 + 54677 0.67 0.778325
Target:  5'- -gUAUGCUCGgcgagCGAGAccgugUCGAGgCGGGUg -3'
miRNA:   3'- cuGUGCGAGUa----GCUCU-----AGCUC-GUCCG- -5'
23338 3' -53.6 NC_005259.1 + 51795 0.67 0.795029
Target:  5'- --gGCGCUCggCG-GGUCGgucagcucaggcagGGCGGGCa -3'
miRNA:   3'- cugUGCGAGuaGCuCUAGC--------------UCGUCCG- -5'
23338 3' -53.6 NC_005259.1 + 8065 0.67 0.797927
Target:  5'- cGC-CGCcgaCAUCGAGAUCGuGCcgcgcuGGCg -3'
miRNA:   3'- cUGuGCGa--GUAGCUCUAGCuCGu-----CCG- -5'
23338 3' -53.6 NC_005259.1 + 40118 0.67 0.797927
Target:  5'- aAUGCGCUCGUgGA-AUUG-GCGGGCg -3'
miRNA:   3'- cUGUGCGAGUAgCUcUAGCuCGUCCG- -5'
23338 3' -53.6 NC_005259.1 + 42325 0.67 0.807475
Target:  5'- gGGCACcCUCGUCGuaaaccacGGggCGAGCucGGGCc -3'
miRNA:   3'- -CUGUGcGAGUAGC--------UCuaGCUCG--UCCG- -5'
23338 3' -53.6 NC_005259.1 + 14029 0.67 0.807475
Target:  5'- cGGCACGaUCAUCGAG--CG-GCAGcGCa -3'
miRNA:   3'- -CUGUGCgAGUAGCUCuaGCuCGUC-CG- -5'
23338 3' -53.6 NC_005259.1 + 18111 0.67 0.807475
Target:  5'- -uCGCGCUCAUCGAcuacgaGGGCAacaucGGCa -3'
miRNA:   3'- cuGUGCGAGUAGCUcuag--CUCGU-----CCG- -5'
23338 3' -53.6 NC_005259.1 + 27169 0.67 0.816841
Target:  5'- --gAUGC-CGUCGGcGAU-GAGCAGGCu -3'
miRNA:   3'- cugUGCGaGUAGCU-CUAgCUCGUCCG- -5'
23338 3' -53.6 NC_005259.1 + 66107 0.67 0.816841
Target:  5'- cGCACGCg---CGAcuucuacgcgcGUCGAGCAGGCc -3'
miRNA:   3'- cUGUGCGaguaGCUc----------UAGCUCGUCCG- -5'
23338 3' -53.6 NC_005259.1 + 50694 0.66 0.826014
Target:  5'- aGGCGCuGCUCGUCGucgcGcUUGAGcCGGGUg -3'
miRNA:   3'- -CUGUG-CGAGUAGCu---CuAGCUC-GUCCG- -5'
23338 3' -53.6 NC_005259.1 + 35616 0.66 0.826014
Target:  5'- -cCACGCUgCGUCGAGuaguUCGGGCc-GCc -3'
miRNA:   3'- cuGUGCGA-GUAGCUCu---AGCUCGucCG- -5'
23338 3' -53.6 NC_005259.1 + 58909 0.66 0.826014
Target:  5'- -uCGgGCUCGUCGGcGGUCuugucgucGGCGGGCg -3'
miRNA:   3'- cuGUgCGAGUAGCU-CUAGc-------UCGUCCG- -5'
23338 3' -53.6 NC_005259.1 + 57432 0.66 0.826014
Target:  5'- cGGCuCGCUUAcgcggCGAGGUUGgugcgacgcugcGGCAGGCc -3'
miRNA:   3'- -CUGuGCGAGUa----GCUCUAGC------------UCGUCCG- -5'
23338 3' -53.6 NC_005259.1 + 50530 0.66 0.842876
Target:  5'- cGACGCGCUCGccUCGGG--CGAggaaaccGCAcGGCa -3'
miRNA:   3'- -CUGUGCGAGU--AGCUCuaGCU-------CGU-CCG- -5'
23338 3' -53.6 NC_005259.1 + 51044 0.66 0.843742
Target:  5'- gGGCACGCgcCAUCcuuGAaccaaUCGAGCAGcGCc -3'
miRNA:   3'- -CUGUGCGa-GUAGcu-CU-----AGCUCGUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.