Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23338 | 3' | -53.6 | NC_005259.1 | + | 58974 | 0.68 | 0.737406 |
|
Target: 5'- gGGCA-GCUCGUCGGcGAcggCGAGCuuGGCc -3' miRNA: 3'- -CUGUgCGAGUAGCU-CUa--GCUCGu-CCG- -5' |
|||||||
| 23338 | 3' | -53.6 | NC_005259.1 | + | 59115 | 0.77 | 0.273528 |
|
Target: 5'- aGCACGCgcggCAUCGAGcagagcGUCGAGCucGGCa -3' miRNA: 3'- cUGUGCGa---GUAGCUC------UAGCUCGu-CCG- -5' |
|||||||
| 23338 | 3' | -53.6 | NC_005259.1 | + | 62822 | 0.69 | 0.662178 |
|
Target: 5'- aGCGcCGCUUGcccgCGAGGUCGAGCGcGCg -3' miRNA: 3'- cUGU-GCGAGUa---GCUCUAGCUCGUcCG- -5' |
|||||||
| 23338 | 3' | -53.6 | NC_005259.1 | + | 66107 | 0.67 | 0.816841 |
|
Target: 5'- cGCACGCg---CGAcuucuacgcgcGUCGAGCAGGCc -3' miRNA: 3'- cUGUGCGaguaGCUc----------UAGCUCGUCCG- -5' |
|||||||
| 23338 | 3' | -53.6 | NC_005259.1 | + | 66173 | 0.69 | 0.716269 |
|
Target: 5'- cGCAUGCUCAUCGGcaccgcugccGGUgcaguaCGGGuCAGGCg -3' miRNA: 3'- cUGUGCGAGUAGCU----------CUA------GCUC-GUCCG- -5' |
|||||||
| 23338 | 3' | -53.6 | NC_005259.1 | + | 68278 | 0.68 | 0.767282 |
|
Target: 5'- aGGCAccguccuCGCcccauaCAUCGGGAUCGGGCGcguccGGCg -3' miRNA: 3'- -CUGU-------GCGa-----GUAGCUCUAGCUCGU-----CCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home