miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2334 3' -56.8 NC_001416.1 + 1802 0.66 0.584519
Target:  5'- uGGGAGGCGaaaAUUGGCGAaCGuccggauGCUGAa -3'
miRNA:   3'- -CCCUCCGCcg-UGACCGUUcGU-------UGACU- -5'
2334 3' -56.8 NC_001416.1 + 13801 0.66 0.584519
Target:  5'- aGGAGGUGaucagcCGCUGGCGcauugagcagugcAGCgAACUGAg -3'
miRNA:   3'- cCCUCCGCc-----GUGACCGU-------------UCG-UUGACU- -5'
2334 3' -56.8 NC_001416.1 + 13244 0.67 0.514211
Target:  5'- aGGAGGCcacGGUACUGGagucguuucuggaaGAGCAcggggGCUGGa -3'
miRNA:   3'- cCCUCCG---CCGUGACCg-------------UUCGU-----UGACU- -5'
2334 3' -56.8 NC_001416.1 + 20356 0.67 0.499494
Target:  5'- uGGccGCGGUGgaGGCAgacguGGCGGCUGAu -3'
miRNA:   3'- cCCucCGCCGUgaCCGU-----UCGUUGACU- -5'
2334 3' -56.8 NC_001416.1 + 4815 0.67 0.499494
Target:  5'- cGGGAuGGUGGCGggGGCAuuugacuGC-GCUGAc -3'
miRNA:   3'- -CCCU-CCGCCGUgaCCGUu------CGuUGACU- -5'
2334 3' -56.8 NC_001416.1 + 16809 0.67 0.499494
Target:  5'- cGGGGGCaGGCACaccgcgccgGGCu-GUGGCUGAu -3'
miRNA:   3'- cCCUCCG-CCGUGa--------CCGuuCGUUGACU- -5'
2334 3' -56.8 NC_001416.1 + 3723 0.69 0.386045
Target:  5'- uGGuGGCGGCAUacaucgccuucacaaUGGCGcucuGCAGCUGc -3'
miRNA:   3'- cCCuCCGCCGUG---------------ACCGUu---CGUUGACu -5'
2334 3' -56.8 NC_001416.1 + 7445 0.71 0.285122
Target:  5'- cGGucGUGGCACUGGUgAAGCugcauACUGAu -3'
miRNA:   3'- cCCucCGCCGUGACCG-UUCGu----UGACU- -5'
2334 3' -56.8 NC_001416.1 + 46295 0.73 0.214071
Target:  5'- cGGAGGCGGUGgUGGCuucacGCAcugACUGAc -3'
miRNA:   3'- cCCUCCGCCGUgACCGuu---CGU---UGACU- -5'
2334 3' -56.8 NC_001416.1 + 2492 0.73 0.210669
Target:  5'- ---uGGCGGCGCUGcGCAucaguauuucccgcuGGCAGCUGGa -3'
miRNA:   3'- cccuCCGCCGUGAC-CGU---------------UCGUUGACU- -5'
2334 3' -56.8 NC_001416.1 + 4990 1.11 0.000391
Target:  5'- cGGGAGGCGGCACUGGCAAGCAACUGAc -3'
miRNA:   3'- -CCCUCCGCCGUGACCGUUCGUUGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.