Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23340 | 3' | -57 | NC_005259.1 | + | 16828 | 0.68 | 0.554666 |
Target: 5'- gUCAUGAUCcgaCACaaGGCGGGUgGCCa -3' miRNA: 3'- aGGUACUGGa--GUGggCCGUCUAgCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 13382 | 0.69 | 0.52361 |
Target: 5'- cCCAUGuucACCgacccacgcauUCGCUCGGCcuuccuggccgGGGUCGCCg -3' miRNA: 3'- aGGUAC---UGG-----------AGUGGGCCG-----------UCUAGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 65166 | 0.69 | 0.52361 |
Target: 5'- gCCAUGGCC-CGCCgGGUcaAGG-CGCUg -3' miRNA: 3'- aGGUACUGGaGUGGgCCG--UCUaGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 45619 | 0.69 | 0.513403 |
Target: 5'- cUCgAUGcccGCCggGCCgGGCAGcgCGCCg -3' miRNA: 3'- -AGgUAC---UGGagUGGgCCGUCuaGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 51830 | 0.69 | 0.493242 |
Target: 5'- -gCA-GACC-CGCCCGGUuGAUCgGCCa -3' miRNA: 3'- agGUaCUGGaGUGGGCCGuCUAG-CGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 16453 | 0.69 | 0.493242 |
Target: 5'- aCCGUcGGCaucggUACCCcgccGCAGAUCGCCg -3' miRNA: 3'- aGGUA-CUGga---GUGGGc---CGUCUAGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 14162 | 0.7 | 0.473452 |
Target: 5'- gUCGUgugGAUCUCGCCgGGCGGGUgGCa -3' miRNA: 3'- aGGUA---CUGGAGUGGgCCGUCUAgCGg -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 26636 | 0.7 | 0.473452 |
Target: 5'- aUCgAUGGCCUggcgugCGCUCGGCAGGuUCGgCg -3' miRNA: 3'- -AGgUACUGGA------GUGGGCCGUCU-AGCgG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 48831 | 0.7 | 0.463708 |
Target: 5'- aCCAUcACCcgCAcCCCGGaagAGAUCGCCc -3' miRNA: 3'- aGGUAcUGGa-GU-GGGCCg--UCUAGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 57690 | 0.7 | 0.463708 |
Target: 5'- aCCGUGGCCagguugccgggcUUGCCCGacucGCGGGUCuGCCa -3' miRNA: 3'- aGGUACUGG------------AGUGGGC----CGUCUAG-CGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 149 | 0.7 | 0.454069 |
Target: 5'- aCCuacUGGgCUCGCCCGGCGGGgucCGgCa -3' miRNA: 3'- aGGu--ACUgGAGUGGGCCGUCUa--GCgG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 57956 | 0.7 | 0.435125 |
Target: 5'- gCCAUGGCC-C-CCaUGGUcgAGGUCGCCg -3' miRNA: 3'- aGGUACUGGaGuGG-GCCG--UCUAGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 43867 | 0.74 | 0.287412 |
Target: 5'- cCCGUGACgaCA-CCGGCAGcGUUGCCg -3' miRNA: 3'- aGGUACUGgaGUgGGCCGUC-UAGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 20479 | 0.74 | 0.287412 |
Target: 5'- gCCGUcGACCUCgacaccGCCCGGCAGcucAUCGgCg -3' miRNA: 3'- aGGUA-CUGGAG------UGGGCCGUC---UAGCgG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 29457 | 0.74 | 0.272999 |
Target: 5'- -gCGUGACCUugcCGCCCGGCucggcauGGAcCGCCg -3' miRNA: 3'- agGUACUGGA---GUGGGCCG-------UCUaGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 44710 | 0.74 | 0.267002 |
Target: 5'- cCCAcccGAUCUgcaacgCACCCGGCAGcgCGCCc -3' miRNA: 3'- aGGUa--CUGGA------GUGGGCCGUCuaGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 42495 | 0.75 | 0.241633 |
Target: 5'- gCCGUGACC-CGUCCGGCGGuGUgGCCa -3' miRNA: 3'- aGGUACUGGaGUGGGCCGUC-UAgCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 52140 | 0.75 | 0.235612 |
Target: 5'- gUCCGgcACCUCGCCgaGGCAGGcagCGCCg -3' miRNA: 3'- -AGGUacUGGAGUGGg-CCGUCUa--GCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 31881 | 0.77 | 0.172795 |
Target: 5'- gUCGUGACCUCgccggucucaagGCCCGGCGcGAgCGCCu -3' miRNA: 3'- aGGUACUGGAG------------UGGGCCGU-CUaGCGG- -5' |
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23340 | 3' | -57 | NC_005259.1 | + | 13171 | 0.78 | 0.155426 |
Target: 5'- cCCGaGACC--GCCCGGCAGcUCGCCa -3' miRNA: 3'- aGGUaCUGGagUGGGCCGUCuAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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