miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23340 5' -59.1 NC_005259.1 + 65124 0.67 0.537769
Target:  5'- aCCGUCGGCGcaCCGGcGGCCacccccGACAAGu -3'
miRNA:   3'- -GGCAGCUGCccGGCU-CCGG------CUGUUCu -5'
23340 5' -59.1 NC_005259.1 + 2166 0.67 0.537769
Target:  5'- gCGUCGAgccgcCGGuuGCCGAGGUcaugggccgcuaCGGCAAGGu -3'
miRNA:   3'- gGCAGCU-----GCC--CGGCUCCG------------GCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 16614 0.67 0.537769
Target:  5'- aCUGUUcaACGGGCCGAGGCaggccaccuaCGGCGAc- -3'
miRNA:   3'- -GGCAGc-UGCCCGGCUCCG----------GCUGUUcu -5'
23340 5' -59.1 NC_005259.1 + 41880 0.68 0.527738
Target:  5'- aCCGU-GGCGGGCCGAuacGCauGCGGGAu -3'
miRNA:   3'- -GGCAgCUGCCCGGCUc--CGgcUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 43950 0.68 0.517778
Target:  5'- gCGUCGGCGauGGgCGGGGCCGccGCcuGAc -3'
miRNA:   3'- gGCAGCUGC--CCgGCUCCGGC--UGuuCU- -5'
23340 5' -59.1 NC_005259.1 + 17832 0.68 0.507894
Target:  5'- gCCaUCGACggguGGGCCGAGGCCa------ -3'
miRNA:   3'- -GGcAGCUG----CCCGGCUCCGGcuguucu -5'
23340 5' -59.1 NC_005259.1 + 60822 0.68 0.507894
Target:  5'- aUCGUCGGCGaugcuGGCCaccaucgcGAGGUCG-CGAGAc -3'
miRNA:   3'- -GGCAGCUGC-----CCGG--------CUCCGGCuGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 9156 0.68 0.488372
Target:  5'- cCCGUCGACGGcauGCCGGuggcaGCCGAUg--- -3'
miRNA:   3'- -GGCAGCUGCC---CGGCUc----CGGCUGuucu -5'
23340 5' -59.1 NC_005259.1 + 38677 0.68 0.488372
Target:  5'- gCUGUUGGCcgccGGGUCGAGGuuGGCcaccuGAGAc -3'
miRNA:   3'- -GGCAGCUG----CCCGGCUCCggCUG-----UUCU- -5'
23340 5' -59.1 NC_005259.1 + 61592 0.68 0.478744
Target:  5'- aUG-CGGUGGGCCGgugGGGUCGGCGGGGa -3'
miRNA:   3'- gGCaGCUGCCCGGC---UCCGGCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 47582 0.69 0.46921
Target:  5'- uCCcUCGGCGGuguuGCCGAauaucuGGUCGGCGAGGc -3'
miRNA:   3'- -GGcAGCUGCC----CGGCU------CCGGCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 35623 0.69 0.459774
Target:  5'- gCGUCGAguaguuCGGGCCGccGCCGcugccgcugGCGAGGg -3'
miRNA:   3'- gGCAGCU------GCCCGGCucCGGC---------UGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 65692 0.69 0.459774
Target:  5'- cCCGaCGAgCGGGCCGAGuagGACGAGGu -3'
miRNA:   3'- -GGCaGCU-GCCCGGCUCcggCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 25600 0.69 0.459774
Target:  5'- cUCGUUG-CGGGCagCGAGGauGACAAGGc -3'
miRNA:   3'- -GGCAGCuGCCCG--GCUCCggCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 46979 0.69 0.45044
Target:  5'- gCCGcCGAugauCGGGCCGAGGgUGcgccacGCGAGGa -3'
miRNA:   3'- -GGCaGCU----GCCCGGCUCCgGC------UGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 64216 0.69 0.441211
Target:  5'- gCCgGUCGGCagcccgguaucgGGGUCGAuaGCCGACGGGAu -3'
miRNA:   3'- -GG-CAGCUG------------CCCGGCUc-CGGCUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 37259 0.69 0.441211
Target:  5'- gCCGUUGcCaGGCuUGAGGCCGcccgGCAGGAc -3'
miRNA:   3'- -GGCAGCuGcCCG-GCUCCGGC----UGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 6101 0.69 0.440294
Target:  5'- gCCGagaUCGcCGaGGCCGAGGCCGccgcuacGCGGGc -3'
miRNA:   3'- -GGC---AGCuGC-CCGGCUCCGGC-------UGUUCu -5'
23340 5' -59.1 NC_005259.1 + 35992 0.69 0.440294
Target:  5'- aCCGaCGGCGaGGCCGGacugcaccgagguGGCCaGCGAGGu -3'
miRNA:   3'- -GGCaGCUGC-CCGGCU-------------CCGGcUGUUCU- -5'
23340 5' -59.1 NC_005259.1 + 39987 0.69 0.43209
Target:  5'- aCC-UCGACGGGCUGAucGCCGcCGAGc -3'
miRNA:   3'- -GGcAGCUGCCCGGCUc-CGGCuGUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.