miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23342 3' -55 NC_005259.1 + 18966 0.67 0.705994
Target:  5'- -gGGUgACCUCGCCGCguACAucGCCcgGCa -3'
miRNA:   3'- gaUCAgUGGGGCGGUGguUGU--UGG--UG- -5'
23342 3' -55 NC_005259.1 + 26128 0.67 0.704925
Target:  5'- -cGGUCGCCgguccgaCGCCGCCGaggccgaGCAGCC-Cg -3'
miRNA:   3'- gaUCAGUGGg------GCGGUGGU-------UGUUGGuG- -5'
23342 3' -55 NC_005259.1 + 4032 0.67 0.694198
Target:  5'- -cGGUCAagguucacagaauCCCCGCCACCc-CAACaCAUu -3'
miRNA:   3'- gaUCAGU-------------GGGGCGGUGGuuGUUG-GUG- -5'
23342 3' -55 NC_005259.1 + 23780 0.68 0.688812
Target:  5'- -----aGCCCCGCagacgcacgaaacCCAACAACCACg -3'
miRNA:   3'- gaucagUGGGGCGgu-----------GGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 9923 0.68 0.688812
Target:  5'- gCUGGUCAUugcgguugaacacguUgCGCCACCAAucgagcCGACCGCc -3'
miRNA:   3'- -GAUCAGUG---------------GgGCGGUGGUU------GUUGGUG- -5'
23342 3' -55 NC_005259.1 + 7285 0.68 0.684494
Target:  5'- ----cCGCCCCGCCcCCAAgcACUACa -3'
miRNA:   3'- gaucaGUGGGGCGGuGGUUguUGGUG- -5'
23342 3' -55 NC_005259.1 + 1835 0.68 0.68125
Target:  5'- cCUGcUCGCCgCUGCCGCCGAgGccgagaaagccgccGCCGCg -3'
miRNA:   3'- -GAUcAGUGG-GGCGGUGGUUgU--------------UGGUG- -5'
23342 3' -55 NC_005259.1 + 45770 0.68 0.673664
Target:  5'- ----aCGCCCuCGCCggguGCCAGC-ACCGCg -3'
miRNA:   3'- gaucaGUGGG-GCGG----UGGUUGuUGGUG- -5'
23342 3' -55 NC_005259.1 + 64669 0.68 0.673664
Target:  5'- ---aUCACCCa--CACCAGCAccGCCGCg -3'
miRNA:   3'- gaucAGUGGGgcgGUGGUUGU--UGGUG- -5'
23342 3' -55 NC_005259.1 + 18213 0.68 0.673664
Target:  5'- -aGGUCgACCCCGaUCACgCGAUGACCGg -3'
miRNA:   3'- gaUCAG-UGGGGC-GGUG-GUUGUUGGUg -5'
23342 3' -55 NC_005259.1 + 20304 0.68 0.662796
Target:  5'- uCUGGUCGCCgaGCUACUAcaaaccguucACGugCACg -3'
miRNA:   3'- -GAUCAGUGGggCGGUGGU----------UGUugGUG- -5'
23342 3' -55 NC_005259.1 + 48140 0.68 0.662796
Target:  5'- ----cCACCgCCGCC-CCGGCcACCACc -3'
miRNA:   3'- gaucaGUGG-GGCGGuGGUUGuUGGUG- -5'
23342 3' -55 NC_005259.1 + 26058 0.68 0.6519
Target:  5'- uUGGcCAUgCCGCCGCCgAGCAgucccccgagGCCGCc -3'
miRNA:   3'- gAUCaGUGgGGCGGUGG-UUGU----------UGGUG- -5'
23342 3' -55 NC_005259.1 + 45398 0.68 0.6519
Target:  5'- -gGGUCGCCgCCGagcgCGCUGAUGGCCGCc -3'
miRNA:   3'- gaUCAGUGG-GGCg---GUGGUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 6607 0.68 0.6519
Target:  5'- -cGGaUCACCCCGUCgaucaagauuGCCAGCGgguCCGCc -3'
miRNA:   3'- gaUC-AGUGGGGCGG----------UGGUUGUu--GGUG- -5'
23342 3' -55 NC_005259.1 + 19879 0.68 0.6519
Target:  5'- -gGGaUCGCCgaCGCCGCgcccaagaugugCGACAACCACg -3'
miRNA:   3'- gaUC-AGUGGg-GCGGUG------------GUUGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 42231 0.68 0.6519
Target:  5'- --cGUC-CCCgGCCAUCu-CGACCACc -3'
miRNA:   3'- gauCAGuGGGgCGGUGGuuGUUGGUG- -5'
23342 3' -55 NC_005259.1 + 7578 0.68 0.640986
Target:  5'- ---uUCGCgCCGCCGCCGcCGACCuCa -3'
miRNA:   3'- gaucAGUGgGGCGGUGGUuGUUGGuG- -5'
23342 3' -55 NC_005259.1 + 21820 0.68 0.640986
Target:  5'- -cGGUCACCacaCCaaCACCAGCAACaCACc -3'
miRNA:   3'- gaUCAGUGG---GGcgGUGGUUGUUG-GUG- -5'
23342 3' -55 NC_005259.1 + 28568 0.68 0.640986
Target:  5'- ---aUCAcCCCCGCCACCGccucugacGCcGCCAUc -3'
miRNA:   3'- gaucAGU-GGGGCGGUGGU--------UGuUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.