miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23342 5' -54.7 NC_005259.1 + 12070 0.66 0.773037
Target:  5'- cGGCAgacACCGagaUGGGCACCuuGGUGGUc -3'
miRNA:   3'- cUUGU---UGGC---ACCCGUGGuuCCGUCAu -5'
23342 5' -54.7 NC_005259.1 + 9138 0.66 0.756621
Target:  5'- cGGGCAGCCGUGcucgugcccgucgacGGCauGCCGGuGGCAGc- -3'
miRNA:   3'- -CUUGUUGGCAC---------------CCG--UGGUU-CCGUCau -5'
23342 5' -54.7 NC_005259.1 + 16434 0.66 0.741985
Target:  5'- cGAGCGGCCcaaaccGGGCACCGucGGCAucgGUAc -3'
miRNA:   3'- -CUUGUUGGca----CCCGUGGUu-CCGU---CAU- -5'
23342 5' -54.7 NC_005259.1 + 15388 0.67 0.709919
Target:  5'- -cGCAACCGUGGccgcGCAcucCCAAGGguGc- -3'
miRNA:   3'- cuUGUUGGCACC----CGU---GGUUCCguCau -5'
23342 5' -54.7 NC_005259.1 + 62858 0.67 0.69906
Target:  5'- cGAGCAGCCGcucGGCG-CGAGGUAGg- -3'
miRNA:   3'- -CUUGUUGGCac-CCGUgGUUCCGUCau -5'
23342 5' -54.7 NC_005259.1 + 34882 0.67 0.677155
Target:  5'- ---gGACCG-GGGUGCCucGGGCAGg- -3'
miRNA:   3'- cuugUUGGCaCCCGUGGu-UCCGUCau -5'
23342 5' -54.7 NC_005259.1 + 11005 0.68 0.655076
Target:  5'- cGGCAccgcGCCGgacGCGCCGAGGCAGg- -3'
miRNA:   3'- cUUGU----UGGCaccCGUGGUUCCGUCau -5'
23342 5' -54.7 NC_005259.1 + 64439 0.68 0.610743
Target:  5'- cGAGCuGCCG-GGGCGCUgcccuuGGGGCGGc- -3'
miRNA:   3'- -CUUGuUGGCaCCCGUGG------UUCCGUCau -5'
23342 5' -54.7 NC_005259.1 + 32507 0.69 0.555808
Target:  5'- uGAAC-ACCGUGaGGUAgUCGAGGCGGg- -3'
miRNA:   3'- -CUUGuUGGCAC-CCGU-GGUUCCGUCau -5'
23342 5' -54.7 NC_005259.1 + 58194 0.7 0.534209
Target:  5'- uGACcGCCGUGGGCuuGCCGgugucaGGGuCAGUGg -3'
miRNA:   3'- cUUGuUGGCACCCG--UGGU------UCC-GUCAU- -5'
23342 5' -54.7 NC_005259.1 + 58765 0.7 0.512914
Target:  5'- cGAACGacGCUGcGGGCGCUgugcgccggucGAGGCGGUGa -3'
miRNA:   3'- -CUUGU--UGGCaCCCGUGG-----------UUCCGUCAU- -5'
23342 5' -54.7 NC_005259.1 + 16688 0.71 0.461339
Target:  5'- cGGCGAUCcUGGGCACCGAGGUg--- -3'
miRNA:   3'- cUUGUUGGcACCCGUGGUUCCGucau -5'
23342 5' -54.7 NC_005259.1 + 38448 0.72 0.394058
Target:  5'- cGAAaauGCCGUgcgaGGGCACCGAgGGCAGa- -3'
miRNA:   3'- -CUUgu-UGGCA----CCCGUGGUU-CCGUCau -5'
23342 5' -54.7 NC_005259.1 + 42520 0.77 0.199073
Target:  5'- cAGCAGCCGUccggccccgauGGGCACCGAGGUGGc- -3'
miRNA:   3'- cUUGUUGGCA-----------CCCGUGGUUCCGUCau -5'
23342 5' -54.7 NC_005259.1 + 2854 1.07 0.00173
Target:  5'- gGAACAACCGUGGGCACCAAGGCAGUAg -3'
miRNA:   3'- -CUUGUUGGCACCCGUGGUUCCGUCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.