Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23342 | 5' | -54.7 | NC_005259.1 | + | 12070 | 0.66 | 0.773037 |
Target: 5'- cGGCAgacACCGagaUGGGCACCuuGGUGGUc -3' miRNA: 3'- cUUGU---UGGC---ACCCGUGGuuCCGUCAu -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 9138 | 0.66 | 0.756621 |
Target: 5'- cGGGCAGCCGUGcucgugcccgucgacGGCauGCCGGuGGCAGc- -3' miRNA: 3'- -CUUGUUGGCAC---------------CCG--UGGUU-CCGUCau -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 16434 | 0.66 | 0.741985 |
Target: 5'- cGAGCGGCCcaaaccGGGCACCGucGGCAucgGUAc -3' miRNA: 3'- -CUUGUUGGca----CCCGUGGUu-CCGU---CAU- -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 15388 | 0.67 | 0.709919 |
Target: 5'- -cGCAACCGUGGccgcGCAcucCCAAGGguGc- -3' miRNA: 3'- cuUGUUGGCACC----CGU---GGUUCCguCau -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 62858 | 0.67 | 0.69906 |
Target: 5'- cGAGCAGCCGcucGGCG-CGAGGUAGg- -3' miRNA: 3'- -CUUGUUGGCac-CCGUgGUUCCGUCau -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 34882 | 0.67 | 0.677155 |
Target: 5'- ---gGACCG-GGGUGCCucGGGCAGg- -3' miRNA: 3'- cuugUUGGCaCCCGUGGu-UCCGUCau -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 11005 | 0.68 | 0.655076 |
Target: 5'- cGGCAccgcGCCGgacGCGCCGAGGCAGg- -3' miRNA: 3'- cUUGU----UGGCaccCGUGGUUCCGUCau -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 64439 | 0.68 | 0.610743 |
Target: 5'- cGAGCuGCCG-GGGCGCUgcccuuGGGGCGGc- -3' miRNA: 3'- -CUUGuUGGCaCCCGUGG------UUCCGUCau -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 32507 | 0.69 | 0.555808 |
Target: 5'- uGAAC-ACCGUGaGGUAgUCGAGGCGGg- -3' miRNA: 3'- -CUUGuUGGCAC-CCGU-GGUUCCGUCau -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 58194 | 0.7 | 0.534209 |
Target: 5'- uGACcGCCGUGGGCuuGCCGgugucaGGGuCAGUGg -3' miRNA: 3'- cUUGuUGGCACCCG--UGGU------UCC-GUCAU- -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 58765 | 0.7 | 0.512914 |
Target: 5'- cGAACGacGCUGcGGGCGCUgugcgccggucGAGGCGGUGa -3' miRNA: 3'- -CUUGU--UGGCaCCCGUGG-----------UUCCGUCAU- -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 16688 | 0.71 | 0.461339 |
Target: 5'- cGGCGAUCcUGGGCACCGAGGUg--- -3' miRNA: 3'- cUUGUUGGcACCCGUGGUUCCGucau -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 38448 | 0.72 | 0.394058 |
Target: 5'- cGAAaauGCCGUgcgaGGGCACCGAgGGCAGa- -3' miRNA: 3'- -CUUgu-UGGCA----CCCGUGGUU-CCGUCau -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 42520 | 0.77 | 0.199073 |
Target: 5'- cAGCAGCCGUccggccccgauGGGCACCGAGGUGGc- -3' miRNA: 3'- cUUGUUGGCA-----------CCCGUGGUUCCGUCau -5' |
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23342 | 5' | -54.7 | NC_005259.1 | + | 2854 | 1.07 | 0.00173 |
Target: 5'- gGAACAACCGUGGGCACCAAGGCAGUAg -3' miRNA: 3'- -CUUGUUGGCACCCGUGGUUCCGUCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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