miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23344 5' -56.9 NC_005259.1 + 4508 0.66 0.679622
Target:  5'- cCGCGCcg-GGAguGGcgcugCGCGGCaccccGGUCg -3'
miRNA:   3'- -GCGCGuaaCCUguCUa----GCGCCG-----CCAG- -5'
23344 5' -56.9 NC_005259.1 + 8954 0.66 0.668973
Target:  5'- gCGCGCcgUGGACGGGcacCGUGcCGGg- -3'
miRNA:   3'- -GCGCGuaACCUGUCUa--GCGCcGCCag -5'
23344 5' -56.9 NC_005259.1 + 29272 0.66 0.658291
Target:  5'- cCGCGCcgUGGACgAGAUCGCcaacccGUCg -3'
miRNA:   3'- -GCGCGuaACCUG-UCUAGCGccgc--CAG- -5'
23344 5' -56.9 NC_005259.1 + 11019 0.67 0.636868
Target:  5'- aCGCGCcga-GGCAGGaguUCGCcgGGUGGUCa -3'
miRNA:   3'- -GCGCGuaacCUGUCU---AGCG--CCGCCAG- -5'
23344 5' -56.9 NC_005259.1 + 10471 0.67 0.625073
Target:  5'- uGCGCAgcgGGACgaucuugGGGUCGUGGuuGUUg -3'
miRNA:   3'- gCGCGUaa-CCUG-------UCUAGCGCCgcCAG- -5'
23344 5' -56.9 NC_005259.1 + 51671 0.68 0.583392
Target:  5'- gGCGCGUcGGGCAcGggCGCGcGaUGGUCu -3'
miRNA:   3'- gCGCGUAaCCUGU-CuaGCGC-C-GCCAG- -5'
23344 5' -56.9 NC_005259.1 + 51253 0.69 0.530863
Target:  5'- aCGC-CGUUGcGGC---UCGCGGUGGUCa -3'
miRNA:   3'- -GCGcGUAAC-CUGucuAGCGCCGCCAG- -5'
23344 5' -56.9 NC_005259.1 + 31510 0.69 0.520551
Target:  5'- cCGCGCc--GGACuugcuuGAUCGgGGUGGUg -3'
miRNA:   3'- -GCGCGuaaCCUGu-----CUAGCgCCGCCAg -5'
23344 5' -56.9 NC_005259.1 + 41600 0.71 0.417092
Target:  5'- uCGCGCGUcGGuguuuCGGAUCGCgaggcugaccaugguGGCGGUg -3'
miRNA:   3'- -GCGCGUAaCCu----GUCUAGCG---------------CCGCCAg -5'
23344 5' -56.9 NC_005259.1 + 58563 0.72 0.328731
Target:  5'- uCGgGCgGUUGGGcCGGAUCGCGGCGcGg- -3'
miRNA:   3'- -GCgCG-UAACCU-GUCUAGCGCCGC-Cag -5'
23344 5' -56.9 NC_005259.1 + 49976 0.76 0.204742
Target:  5'- uGCGCAUUGcGcgcACGGAUCGCGuGCGGa- -3'
miRNA:   3'- gCGCGUAAC-C---UGUCUAGCGC-CGCCag -5'
23344 5' -56.9 NC_005259.1 + 2540 1.1 0.000779
Target:  5'- gCGCGCAUUGGACAGAUCGCGGCGGUCa -3'
miRNA:   3'- -GCGCGUAACCUGUCUAGCGCCGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.