miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23345 5' -60.2 NC_005259.1 + 44526 0.66 0.475303
Target:  5'- -aCGCCGcCGCCCGGCaGUCCa----- -3'
miRNA:   3'- uaGUGGC-GCGGGCCGaUAGGgccaaa -5'
23345 5' -60.2 NC_005259.1 + 3687 0.66 0.465545
Target:  5'- cGUCACCGcCGCCCaGCUugagaCCGGc-- -3'
miRNA:   3'- -UAGUGGC-GCGGGcCGAuag--GGCCaaa -5'
23345 5' -60.2 NC_005259.1 + 13475 0.66 0.455893
Target:  5'- cUCACCGCgcuGCCCGacgaUGUCUCGGUc- -3'
miRNA:   3'- uAGUGGCG---CGGGCcg--AUAGGGCCAaa -5'
23345 5' -60.2 NC_005259.1 + 4505 0.67 0.431316
Target:  5'- -cCACCGCGCCgggaguggcgcugcgCGGCac-CCCGGUc- -3'
miRNA:   3'- uaGUGGCGCGG---------------GCCGauaGGGCCAaa -5'
23345 5' -60.2 NC_005259.1 + 35692 0.67 0.409332
Target:  5'- -aCGCCGUGCCCGGCgagggGUCgCUGa--- -3'
miRNA:   3'- uaGUGGCGCGGGCCGa----UAG-GGCcaaa -5'
23345 5' -60.2 NC_005259.1 + 44845 0.67 0.408431
Target:  5'- -aCACCGCGCCCGaGCaGUCgcucagaCCGGc-- -3'
miRNA:   3'- uaGUGGCGCGGGC-CGaUAG-------GGCCaaa -5'
23345 5' -60.2 NC_005259.1 + 64015 0.67 0.400381
Target:  5'- -cCACCGCGCCCgaGGCgcggcgAggCCGGUg- -3'
miRNA:   3'- uaGUGGCGCGGG--CCGa-----UagGGCCAaa -5'
23345 5' -60.2 NC_005259.1 + 52962 0.68 0.357545
Target:  5'- -cCGCCGCuGCCCGGCUGcaUCGGc-- -3'
miRNA:   3'- uaGUGGCG-CGGGCCGAUagGGCCaaa -5'
23345 5' -60.2 NC_005259.1 + 53255 0.68 0.357545
Target:  5'- -aCACCGuCGCCgCcGCUGUCgCCGGUg- -3'
miRNA:   3'- uaGUGGC-GCGG-GcCGAUAG-GGCCAaa -5'
23345 5' -60.2 NC_005259.1 + 53717 0.7 0.288844
Target:  5'- gGUCACCGCGCCgcugaUGGUgaUGUCgCCGGg-- -3'
miRNA:   3'- -UAGUGGCGCGG-----GCCG--AUAG-GGCCaaa -5'
23345 5' -60.2 NC_005259.1 + 20169 0.71 0.236864
Target:  5'- -cCACCGCGCCCgccgccucGGCUgacgagAUCgCCGGUUg -3'
miRNA:   3'- uaGUGGCGCGGG--------CCGA------UAG-GGCCAAa -5'
23345 5' -60.2 NC_005259.1 + 26800 0.71 0.219489
Target:  5'- -gCGCCGcCGCCCGGUUGg-CCGGUa- -3'
miRNA:   3'- uaGUGGC-GCGGGCCGAUagGGCCAaa -5'
23345 5' -60.2 NC_005259.1 + 29150 0.72 0.213944
Target:  5'- cUCACCGCGCUCGGCUGgaCCGu--- -3'
miRNA:   3'- uAGUGGCGCGGGCCGAUagGGCcaaa -5'
23345 5' -60.2 NC_005259.1 + 772 0.73 0.183151
Target:  5'- -cCACCGCGCCgaggCGGCUGcCCuCGGUUg -3'
miRNA:   3'- uaGUGGCGCGG----GCCGAUaGG-GCCAAa -5'
23345 5' -60.2 NC_005259.1 + 2275 1.02 0.001096
Target:  5'- cAUCACCGCGCCCGGCUAUCCCGGUUUc -3'
miRNA:   3'- -UAGUGGCGCGGGCCGAUAGGGCCAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.