miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23346 3' -55.8 NC_005259.1 + 1412 1.12 0.000861
Target:  5'- aCGACCCGAGCACGGCAUACGUCGUGCu -3'
miRNA:   3'- -GCUGGGCUCGUGCCGUAUGCAGCACG- -5'
23346 3' -55.8 NC_005259.1 + 61066 0.79 0.168297
Target:  5'- uGugCCGGGCAuCGGCAUagGCGUCGUcgGCc -3'
miRNA:   3'- gCugGGCUCGU-GCCGUA--UGCAGCA--CG- -5'
23346 3' -55.8 NC_005259.1 + 19103 0.75 0.301688
Target:  5'- gCGAacucaCCGGcGCugGuGUGUGCGUCGUGCa -3'
miRNA:   3'- -GCUg----GGCU-CGugC-CGUAUGCAGCACG- -5'
23346 3' -55.8 NC_005259.1 + 50231 0.73 0.389847
Target:  5'- uCGAUCCGAGCGCGGgc-GCGgaUCGUGg -3'
miRNA:   3'- -GCUGGGCUCGUGCCguaUGC--AGCACg -5'
23346 3' -55.8 NC_005259.1 + 34023 0.72 0.416646
Target:  5'- cCGGCCuCG---GCGGCGUGCGUCG-GCg -3'
miRNA:   3'- -GCUGG-GCucgUGCCGUAUGCAGCaCG- -5'
23346 3' -55.8 NC_005259.1 + 14200 0.72 0.423059
Target:  5'- --cCCCGAGCAggcCGGgAUcaacuacccggcgcGCGUCGUGCg -3'
miRNA:   3'- gcuGGGCUCGU---GCCgUA--------------UGCAGCACG- -5'
23346 3' -55.8 NC_005259.1 + 26403 0.72 0.454069
Target:  5'- cCGACgCCGGGCGCGGCGgugcCGcCGUagaacGCa -3'
miRNA:   3'- -GCUG-GGCUCGUGCCGUau--GCaGCA-----CG- -5'
23346 3' -55.8 NC_005259.1 + 61120 0.72 0.454069
Target:  5'- cCGAgCCGAGCACGGUgc-CGUucucgaucCGUGCc -3'
miRNA:   3'- -GCUgGGCUCGUGCCGuauGCA--------GCACG- -5'
23346 3' -55.8 NC_005259.1 + 65098 0.7 0.513403
Target:  5'- uCGGCUCGuGGCACGGUcaGUGCGUCaccgucgGCg -3'
miRNA:   3'- -GCUGGGC-UCGUGCCG--UAUGCAGca-----CG- -5'
23346 3' -55.8 NC_005259.1 + 32917 0.7 0.52361
Target:  5'- cCGGCCCGcucgGGCGCGGCGguauCGUCa--- -3'
miRNA:   3'- -GCUGGGC----UCGUGCCGUau--GCAGcacg -5'
23346 3' -55.8 NC_005259.1 + 25264 0.7 0.544247
Target:  5'- ---aCCGAGUACGGCAcgAUGgccacCGUGCa -3'
miRNA:   3'- gcugGGCUCGUGCCGUa-UGCa----GCACG- -5'
23346 3' -55.8 NC_005259.1 + 50990 0.7 0.544247
Target:  5'- gGugUCGAGuCAcCGGCGaaaaaccggacgUugGUCGUGCu -3'
miRNA:   3'- gCugGGCUC-GU-GCCGU------------AugCAGCACG- -5'
23346 3' -55.8 NC_005259.1 + 66114 0.7 0.554666
Target:  5'- gCGACUucuacgcgcguCGAGCaggccaucagACGGCGUGCGUUG-GCa -3'
miRNA:   3'- -GCUGG-----------GCUCG----------UGCCGUAUGCAGCaCG- -5'
23346 3' -55.8 NC_005259.1 + 23677 0.7 0.560946
Target:  5'- cCGAcCCCGAGCA-GGCGcacgcagacuaccGCGUCGUGa -3'
miRNA:   3'- -GCU-GGGCUCGUgCCGUa------------UGCAGCACg -5'
23346 3' -55.8 NC_005259.1 + 49606 0.7 0.569348
Target:  5'- uCGACCuCGGGCAgcucaucaucgucauCGGCGgcagccGCGUCG-GCg -3'
miRNA:   3'- -GCUGG-GCUCGU---------------GCCGUa-----UGCAGCaCG- -5'
23346 3' -55.8 NC_005259.1 + 55362 0.69 0.607485
Target:  5'- -cGCCUGAGCgACGGCAgcCGUgaucaGUGCc -3'
miRNA:   3'- gcUGGGCUCG-UGCCGUauGCAg----CACG- -5'
23346 3' -55.8 NC_005259.1 + 562 0.68 0.639477
Target:  5'- uGACCCGcacCACGGCGUggGgGUCGaGCu -3'
miRNA:   3'- gCUGGGCuc-GUGCCGUA--UgCAGCaCG- -5'
23346 3' -55.8 NC_005259.1 + 5580 0.68 0.650141
Target:  5'- cCGugCCGuGCugGGaAUGCGgaGUGCu -3'
miRNA:   3'- -GCugGGCuCGugCCgUAUGCagCACG- -5'
23346 3' -55.8 NC_005259.1 + 19406 0.68 0.671412
Target:  5'- uCGACCCGAuGCAgGGag-AaaUCGUGCu -3'
miRNA:   3'- -GCUGGGCU-CGUgCCguaUgcAGCACG- -5'
23346 3' -55.8 NC_005259.1 + 20520 0.68 0.671412
Target:  5'- uGuCCCGAGCACGG-GUGCG-C-UGCc -3'
miRNA:   3'- gCuGGGCUCGUGCCgUAUGCaGcACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.