Results 1 - 20 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 1412 | 1.12 | 0.000861 |
Target: 5'- aCGACCCGAGCACGGCAUACGUCGUGCu -3' miRNA: 3'- -GCUGGGCUCGUGCCGUAUGCAGCACG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 61066 | 0.79 | 0.168297 |
Target: 5'- uGugCCGGGCAuCGGCAUagGCGUCGUcgGCc -3' miRNA: 3'- gCugGGCUCGU-GCCGUA--UGCAGCA--CG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 19103 | 0.75 | 0.301688 |
Target: 5'- gCGAacucaCCGGcGCugGuGUGUGCGUCGUGCa -3' miRNA: 3'- -GCUg----GGCU-CGugC-CGUAUGCAGCACG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 50231 | 0.73 | 0.389847 |
Target: 5'- uCGAUCCGAGCGCGGgc-GCGgaUCGUGg -3' miRNA: 3'- -GCUGGGCUCGUGCCguaUGC--AGCACg -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 34023 | 0.72 | 0.416646 |
Target: 5'- cCGGCCuCG---GCGGCGUGCGUCG-GCg -3' miRNA: 3'- -GCUGG-GCucgUGCCGUAUGCAGCaCG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 14200 | 0.72 | 0.423059 |
Target: 5'- --cCCCGAGCAggcCGGgAUcaacuacccggcgcGCGUCGUGCg -3' miRNA: 3'- gcuGGGCUCGU---GCCgUA--------------UGCAGCACG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 26403 | 0.72 | 0.454069 |
Target: 5'- cCGACgCCGGGCGCGGCGgugcCGcCGUagaacGCa -3' miRNA: 3'- -GCUG-GGCUCGUGCCGUau--GCaGCA-----CG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 61120 | 0.72 | 0.454069 |
Target: 5'- cCGAgCCGAGCACGGUgc-CGUucucgaucCGUGCc -3' miRNA: 3'- -GCUgGGCUCGUGCCGuauGCA--------GCACG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 65098 | 0.7 | 0.513403 |
Target: 5'- uCGGCUCGuGGCACGGUcaGUGCGUCaccgucgGCg -3' miRNA: 3'- -GCUGGGC-UCGUGCCG--UAUGCAGca-----CG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 32917 | 0.7 | 0.52361 |
Target: 5'- cCGGCCCGcucgGGCGCGGCGguauCGUCa--- -3' miRNA: 3'- -GCUGGGC----UCGUGCCGUau--GCAGcacg -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 25264 | 0.7 | 0.544247 |
Target: 5'- ---aCCGAGUACGGCAcgAUGgccacCGUGCa -3' miRNA: 3'- gcugGGCUCGUGCCGUa-UGCa----GCACG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 50990 | 0.7 | 0.544247 |
Target: 5'- gGugUCGAGuCAcCGGCGaaaaaccggacgUugGUCGUGCu -3' miRNA: 3'- gCugGGCUC-GU-GCCGU------------AugCAGCACG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 66114 | 0.7 | 0.554666 |
Target: 5'- gCGACUucuacgcgcguCGAGCaggccaucagACGGCGUGCGUUG-GCa -3' miRNA: 3'- -GCUGG-----------GCUCG----------UGCCGUAUGCAGCaCG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 23677 | 0.7 | 0.560946 |
Target: 5'- cCGAcCCCGAGCA-GGCGcacgcagacuaccGCGUCGUGa -3' miRNA: 3'- -GCU-GGGCUCGUgCCGUa------------UGCAGCACg -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 49606 | 0.7 | 0.569348 |
Target: 5'- uCGACCuCGGGCAgcucaucaucgucauCGGCGgcagccGCGUCG-GCg -3' miRNA: 3'- -GCUGG-GCUCGU---------------GCCGUa-----UGCAGCaCG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 55362 | 0.69 | 0.607485 |
Target: 5'- -cGCCUGAGCgACGGCAgcCGUgaucaGUGCc -3' miRNA: 3'- gcUGGGCUCG-UGCCGUauGCAg----CACG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 562 | 0.68 | 0.639477 |
Target: 5'- uGACCCGcacCACGGCGUggGgGUCGaGCu -3' miRNA: 3'- gCUGGGCuc-GUGCCGUA--UgCAGCaCG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 5580 | 0.68 | 0.650141 |
Target: 5'- cCGugCCGuGCugGGaAUGCGgaGUGCu -3' miRNA: 3'- -GCugGGCuCGugCCgUAUGCagCACG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 19406 | 0.68 | 0.671412 |
Target: 5'- uCGACCCGAuGCAgGGag-AaaUCGUGCu -3' miRNA: 3'- -GCUGGGCU-CGUgCCguaUgcAGCACG- -5' |
|||||||
23346 | 3' | -55.8 | NC_005259.1 | + | 20520 | 0.68 | 0.671412 |
Target: 5'- uGuCCCGAGCACGG-GUGCG-C-UGCc -3' miRNA: 3'- gCuGGGCUCGUGCCgUAUGCaGcACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home