miRNA: 3'- gACgAGCg--CACGaAGCGUGACGUGaa -5'
miRNA: 3'- gaCGAGCGCACGAAGc------GUGAC--GUGaa -5'
miRNA: 3'- -GACGAgCGCACGA--AGCGUgACGugAA- -5'
miRNA: 3'- gACGAGCGCaCgAAGCGUGACGuGaa -5'
miRNA: 3'- -GACGAGCGCACGAAGCGUGACGUGAA- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23346 | 5' | -55.8 | NC_005259.1 | + | 37970 | 0.66 | 0.666739 |
|
Target: 5'- uUGgUCGgcaGUGCgUCGUACUGCGCc- -3' miRNA: 3'- gACgAGCg--CACGaAGCGUGACGUGaa -5' |
|||||||
| 23346 | 5' | -55.8 | NC_005259.1 | + | 33061 | 0.67 | 0.622626 |
|
Target: 5'- -cGCUCGCGUGCUUCugguaucCGCUGgcCACc- -3' miRNA: 3'- gaCGAGCGCACGAAGc------GUGAC--GUGaa -5' |
|||||||
| 23346 | 5' | -55.8 | NC_005259.1 | + | 36069 | 0.71 | 0.404801 |
|
Target: 5'- cCUGCU-GUGUGCUcgUCGCGgUGCugUUg -3' miRNA: 3'- -GACGAgCGCACGA--AGCGUgACGugAA- -5' |
|||||||
| 23346 | 5' | -55.8 | NC_005259.1 | + | 14860 | 0.74 | 0.267649 |
|
Target: 5'- gUGCUCGCGaGgUUCGCGCUGCcCg- -3' miRNA: 3'- gACGAGCGCaCgAAGCGUGACGuGaa -5' |
|||||||
| 23346 | 5' | -55.8 | NC_005259.1 | + | 1449 | 1.05 | 0.001629 |
|
Target: 5'- aCUGCUCGCGUGCUUCGCACUGCACUUc -3' miRNA: 3'- -GACGAGCGCACGAAGCGUGACGUGAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home