miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23348 3' -53.9 NC_005259.1 + 8671 0.66 0.859022
Target:  5'- gCCAcGCGGGcaacGGGGCCGCCuCgAUGUc -3'
miRNA:   3'- gGGU-UGUCCu---UCCUGGUGGuGgUACA- -5'
23348 3' -53.9 NC_005259.1 + 4399 0.68 0.725399
Target:  5'- aCCGACAccgaacuacGAGGGCCGCCACCGc-- -3'
miRNA:   3'- gGGUUGUcc-------UUCCUGGUGGUGGUaca -5'
23348 3' -53.9 NC_005259.1 + 60893 0.68 0.725399
Target:  5'- aCCGaauGCGGGcuuGGCCACCAUCGUGa -3'
miRNA:   3'- gGGU---UGUCCuucCUGGUGGUGGUACa -5'
23348 3' -53.9 NC_005259.1 + 25058 0.68 0.756572
Target:  5'- gCCCGuuuuCAGGcAAGGguggcgcuGCCACCGCCGc-- -3'
miRNA:   3'- -GGGUu---GUCC-UUCC--------UGGUGGUGGUaca -5'
23348 3' -53.9 NC_005259.1 + 1741 0.68 0.756572
Target:  5'- aCCAACGaGAgaaAGaGAgCACCGCCAUGg -3'
miRNA:   3'- gGGUUGUcCU---UC-CUgGUGGUGGUACa -5'
23348 3' -53.9 NC_005259.1 + 26200 0.67 0.766728
Target:  5'- -gCGGCAGcauGG-CCGCCGCCGUGUu -3'
miRNA:   3'- ggGUUGUCcuuCCuGGUGGUGGUACA- -5'
23348 3' -53.9 NC_005259.1 + 24109 0.67 0.776746
Target:  5'- aCCGAUGGGAccGGGcggggacuacACCGCCGCCGc-- -3'
miRNA:   3'- gGGUUGUCCU--UCC----------UGGUGGUGGUaca -5'
23348 3' -53.9 NC_005259.1 + 48099 0.67 0.780713
Target:  5'- gCCCGACGGGuccggucaggaaaccGAGcacaccgccucGACCACCGCCGc-- -3'
miRNA:   3'- -GGGUUGUCC---------------UUC-----------CUGGUGGUGGUaca -5'
23348 3' -53.9 NC_005259.1 + 27542 0.67 0.786617
Target:  5'- cCCCAcgGCGGGAuguuGcGGCCACCGauCCAUa- -3'
miRNA:   3'- -GGGU--UGUCCUu---C-CUGGUGGU--GGUAca -5'
23348 3' -53.9 NC_005259.1 + 355 0.68 0.713747
Target:  5'- aCCGaaaGCAGGAaacgaugAGcACCAUCACCAUGa -3'
miRNA:   3'- gGGU---UGUCCU-------UCcUGGUGGUGGUACa -5'
23348 3' -53.9 NC_005259.1 + 17835 0.69 0.67176
Target:  5'- aUCGACGGGuGGGccgagGCCACC-CCGUGg -3'
miRNA:   3'- gGGUUGUCCuUCC-----UGGUGGuGGUACa -5'
23348 3' -53.9 NC_005259.1 + 41728 0.69 0.64997
Target:  5'- -gCGGCGGGGAGGA-CACCGCCu--- -3'
miRNA:   3'- ggGUUGUCCUUCCUgGUGGUGGuaca -5'
23348 3' -53.9 NC_005259.1 + 41995 0.76 0.302454
Target:  5'- aCCGGCGGuGAGGACCA-CACCGUGg -3'
miRNA:   3'- gGGUUGUCcUUCCUGGUgGUGGUACa -5'
23348 3' -53.9 NC_005259.1 + 63709 0.74 0.402196
Target:  5'- gCCCAGCGGGGaucGGGGCCugCGCagccgGUa -3'
miRNA:   3'- -GGGUUGUCCU---UCCUGGugGUGgua--CA- -5'
23348 3' -53.9 NC_005259.1 + 23807 0.72 0.499678
Target:  5'- aCCaCGACAGGA--GACaGCCACCAUGa -3'
miRNA:   3'- -GG-GUUGUCCUucCUGgUGGUGGUACa -5'
23348 3' -53.9 NC_005259.1 + 43956 0.71 0.541548
Target:  5'- -gCGAUGGGcGGGGCCGCCGCC-UGa -3'
miRNA:   3'- ggGUUGUCCuUCCUGGUGGUGGuACa -5'
23348 3' -53.9 NC_005259.1 + 162 0.71 0.552205
Target:  5'- gCCCGGCGGGGuccGGcACCACCgACUcgGUc -3'
miRNA:   3'- -GGGUUGUCCUu--CC-UGGUGG-UGGuaCA- -5'
23348 3' -53.9 NC_005259.1 + 42771 0.71 0.5737
Target:  5'- gCUCGGCGGucucGGGGCCGCCACCGa-- -3'
miRNA:   3'- -GGGUUGUCcu--UCCUGGUGGUGGUaca -5'
23348 3' -53.9 NC_005259.1 + 47033 0.7 0.606275
Target:  5'- cUCCAGCAGGccGGGGAUCugCGCgagCGUGUu -3'
miRNA:   3'- -GGGUUGUCC--UUCCUGGugGUG---GUACA- -5'
23348 3' -53.9 NC_005259.1 + 13217 0.7 0.637953
Target:  5'- gCCAGCGGu--GGGCCucgaccgGCCACCGUGa -3'
miRNA:   3'- gGGUUGUCcuuCCUGG-------UGGUGGUACa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.