Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23348 | 3' | -53.9 | NC_005259.1 | + | 17835 | 0.69 | 0.67176 |
Target: 5'- aUCGACGGGuGGGccgagGCCACC-CCGUGg -3' miRNA: 3'- gGGUUGUCCuUCC-----UGGUGGuGGUACa -5' |
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23348 | 3' | -53.9 | NC_005259.1 | + | 41728 | 0.69 | 0.64997 |
Target: 5'- -gCGGCGGGGAGGA-CACCGCCu--- -3' miRNA: 3'- ggGUUGUCCUUCCUgGUGGUGGuaca -5' |
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23348 | 3' | -53.9 | NC_005259.1 | + | 13217 | 0.7 | 0.637953 |
Target: 5'- gCCAGCGGu--GGGCCucgaccgGCCACCGUGa -3' miRNA: 3'- gGGUUGUCcuuCCUGG-------UGGUGGUACa -5' |
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23348 | 3' | -53.9 | NC_005259.1 | + | 47033 | 0.7 | 0.606275 |
Target: 5'- cUCCAGCAGGccGGGGAUCugCGCgagCGUGUu -3' miRNA: 3'- -GGGUUGUCC--UUCCUGGugGUG---GUACA- -5' |
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23348 | 3' | -53.9 | NC_005259.1 | + | 42771 | 0.71 | 0.5737 |
Target: 5'- gCUCGGCGGucucGGGGCCGCCACCGa-- -3' miRNA: 3'- -GGGUUGUCcu--UCCUGGUGGUGGUaca -5' |
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23348 | 3' | -53.9 | NC_005259.1 | + | 162 | 0.71 | 0.552205 |
Target: 5'- gCCCGGCGGGGuccGGcACCACCgACUcgGUc -3' miRNA: 3'- -GGGUUGUCCUu--CC-UGGUGG-UGGuaCA- -5' |
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23348 | 3' | -53.9 | NC_005259.1 | + | 43956 | 0.71 | 0.541548 |
Target: 5'- -gCGAUGGGcGGGGCCGCCGCC-UGa -3' miRNA: 3'- ggGUUGUCCuUCCUGGUGGUGGuACa -5' |
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23348 | 3' | -53.9 | NC_005259.1 | + | 23807 | 0.72 | 0.499678 |
Target: 5'- aCCaCGACAGGA--GACaGCCACCAUGa -3' miRNA: 3'- -GG-GUUGUCCUucCUGgUGGUGGUACa -5' |
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23348 | 3' | -53.9 | NC_005259.1 | + | 63709 | 0.74 | 0.402196 |
Target: 5'- gCCCAGCGGGGaucGGGGCCugCGCagccgGUa -3' miRNA: 3'- -GGGUUGUCCU---UCCUGGugGUGgua--CA- -5' |
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23348 | 3' | -53.9 | NC_005259.1 | + | 41995 | 0.76 | 0.302454 |
Target: 5'- aCCGGCGGuGAGGACCA-CACCGUGg -3' miRNA: 3'- gGGUUGUCcUUCCUGGUgGUGGUACa -5' |
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23348 | 3' | -53.9 | NC_005259.1 | + | 1143 | 1.09 | 0.001871 |
Target: 5'- cCCCAACAGGAAGGACCACCACCAUGUu -3' miRNA: 3'- -GGGUUGUCCUUCCUGGUGGUGGUACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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