miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23348 5' -55 NC_005259.1 + 55146 0.66 0.793128
Target:  5'- cCGACAagguaGUUGGGUgGCUCACCg--- -3'
miRNA:   3'- -GCUGUag---CAACUCGgCGAGUGGacga -5'
23348 5' -55 NC_005259.1 + 8331 0.66 0.793128
Target:  5'- cCGACggCGaucAGCCGgUCACgCUGCUg -3'
miRNA:   3'- -GCUGuaGCaacUCGGCgAGUG-GACGA- -5'
23348 5' -55 NC_005259.1 + 33037 0.66 0.763463
Target:  5'- uCGACAccucaagcUUGccgGGGUCGCUCGCgUGCUu -3'
miRNA:   3'- -GCUGU--------AGCaa-CUCGGCGAGUGgACGA- -5'
23348 5' -55 NC_005259.1 + 28967 0.66 0.763463
Target:  5'- cCGAgGUCGgUGccgaGGCCGCgagCGCCcGCUa -3'
miRNA:   3'- -GCUgUAGCaAC----UCGGCGa--GUGGaCGA- -5'
23348 5' -55 NC_005259.1 + 1338 0.67 0.739898
Target:  5'- uCGAgAUCGagcgcaacggugccUacUGGGCCGCUCGCC-GCg -3'
miRNA:   3'- -GCUgUAGC--------------A--ACUCGGCGAGUGGaCGa -5'
23348 5' -55 NC_005259.1 + 46675 0.67 0.700864
Target:  5'- uCGGCGagcUCGgccUGAGCCGC-CGCC-GCg -3'
miRNA:   3'- -GCUGU---AGCa--ACUCGGCGaGUGGaCGa -5'
23348 5' -55 NC_005259.1 + 53622 0.68 0.679356
Target:  5'- aGGCGUCGagcggugccgUUG-GCCGCUU-CCUGCa -3'
miRNA:   3'- gCUGUAGC----------AACuCGGCGAGuGGACGa -5'
23348 5' -55 NC_005259.1 + 11119 0.69 0.59237
Target:  5'- gCGACGgugaCGgugcGAGCCG-UCGCCUGCg -3'
miRNA:   3'- -GCUGUa---GCaa--CUCGGCgAGUGGACGa -5'
23348 5' -55 NC_005259.1 + 58133 0.7 0.570771
Target:  5'- cCGACcgCGUUGAGCCGgauCUCAUCgaacucgucgGCg -3'
miRNA:   3'- -GCUGuaGCAACUCGGC---GAGUGGa---------CGa -5'
23348 5' -55 NC_005259.1 + 39127 0.7 0.549368
Target:  5'- aCGACAUCGgUGAGCUGCccgaugugaUCGCCgacGUUg -3'
miRNA:   3'- -GCUGUAGCaACUCGGCG---------AGUGGa--CGA- -5'
23348 5' -55 NC_005259.1 + 63634 0.72 0.456939
Target:  5'- aGAuCAUCGUggcGAGCUGCUCGCUgGCc -3'
miRNA:   3'- gCU-GUAGCAa--CUCGGCGAGUGGaCGa -5'
23348 5' -55 NC_005259.1 + 55698 0.72 0.437524
Target:  5'- uCGGCAgccUCGUUGAugGCCGCgagCACCUcGCc -3'
miRNA:   3'- -GCUGU---AGCAACU--CGGCGa--GUGGA-CGa -5'
23348 5' -55 NC_005259.1 + 44052 0.74 0.31926
Target:  5'- aCGACcggcucgagugcgcuGUCGUUGAGCUucugGCUgACCUGCUc -3'
miRNA:   3'- -GCUG---------------UAGCAACUCGG----CGAgUGGACGA- -5'
23348 5' -55 NC_005259.1 + 57753 0.77 0.233817
Target:  5'- gCGAUGUUGc-GAGCCGCgagCGCCUGCUg -3'
miRNA:   3'- -GCUGUAGCaaCUCGGCGa--GUGGACGA- -5'
23348 5' -55 NC_005259.1 + 1179 1.09 0.001447
Target:  5'- cCGACAUCGUUGAGCCGCUCACCUGCUa -3'
miRNA:   3'- -GCUGUAGCAACUCGGCGAGUGGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.