miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2335 3' -51.4 NC_001416.1 + 4650 0.66 0.869919
Target:  5'- -gAACGGCAUCGccguGcUGCCGGuGU--CCg -3'
miRNA:   3'- aaUUGCCGUAGU----CuACGGCC-CAauGG- -5'
2335 3' -51.4 NC_001416.1 + 14926 0.66 0.860618
Target:  5'- -cGACGGCugguAUCAGGuacggauUGCCGGGcgggACg -3'
miRNA:   3'- aaUUGCCG----UAGUCU-------ACGGCCCaa--UGg -5'
2335 3' -51.4 NC_001416.1 + 35835 0.67 0.825182
Target:  5'- ---cCGGCcUCAGc-GCCGGGUuuucuuUGCCu -3'
miRNA:   3'- aauuGCCGuAGUCuaCGGCCCA------AUGG- -5'
2335 3' -51.4 NC_001416.1 + 18388 0.67 0.815526
Target:  5'- ---cCGGUGUCAGGgaaaagGCCGGaGgaUUGCCg -3'
miRNA:   3'- aauuGCCGUAGUCUa-----CGGCC-C--AAUGG- -5'
2335 3' -51.4 NC_001416.1 + 9502 0.7 0.617866
Target:  5'- cUGGCaGGCGUCAcGGucaUGCCG-GUUGCCg -3'
miRNA:   3'- aAUUG-CCGUAGU-CU---ACGGCcCAAUGG- -5'
2335 3' -51.4 NC_001416.1 + 6505 0.74 0.392505
Target:  5'- -cGACGGCggCGGuaaGCCGGGUccGCCa -3'
miRNA:   3'- aaUUGCCGuaGUCua-CGGCCCAa-UGG- -5'
2335 3' -51.4 NC_001416.1 + 5755 1.1 0.001617
Target:  5'- gUUAACGGCAUCAGAUGCCGGGUUACCu -3'
miRNA:   3'- -AAUUGCCGUAGUCUACGGCCCAAUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.