miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23350 3' -56.1 NC_005259.1 + 593 1.08 0.001215
Target:  5'- cGACAACACCCACGGCACCCACAACCGu -3'
miRNA:   3'- -CUGUUGUGGGUGCCGUGGGUGUUGGC- -5'
23350 3' -56.1 NC_005259.1 + 719 0.73 0.316339
Target:  5'- uGGCAucgcgagaaucACACCgGCGGUGCCUACGccGCCGg -3'
miRNA:   3'- -CUGU-----------UGUGGgUGCCGUGGGUGU--UGGC- -5'
23350 3' -56.1 NC_005259.1 + 966 0.66 0.7385
Target:  5'- cGCAACgGCUCaACGGCgacgagacACCgGCAGCCGu -3'
miRNA:   3'- cUGUUG-UGGG-UGCCG--------UGGgUGUUGGC- -5'
23350 3' -56.1 NC_005259.1 + 1787 0.71 0.417608
Target:  5'- cGACGAgGCCCccaaGGCugUCAUGGCCGa -3'
miRNA:   3'- -CUGUUgUGGGug--CCGugGGUGUUGGC- -5'
23350 3' -56.1 NC_005259.1 + 3762 0.71 0.436311
Target:  5'- cGACAGCGCCCGCaaGGUGCaCUACcaaGACCa -3'
miRNA:   3'- -CUGUUGUGGGUG--CCGUG-GGUG---UUGGc -5'
23350 3' -56.1 NC_005259.1 + 3819 0.66 0.7385
Target:  5'- gGugAcCACCCACGGgGCC-ACGACg- -3'
miRNA:   3'- -CugUuGUGGGUGCCgUGGgUGUUGgc -5'
23350 3' -56.1 NC_005259.1 + 4528 0.67 0.642016
Target:  5'- cGCGGCACCC-CGGUcgauuguGCCCAguGCgGg -3'
miRNA:   3'- cUGUUGUGGGuGCCG-------UGGGUguUGgC- -5'
23350 3' -56.1 NC_005259.1 + 4717 0.66 0.748728
Target:  5'- uGACcGCGCCCGagaaaGCCCGCAaggACCGg -3'
miRNA:   3'- -CUGuUGUGGGUgccg-UGGGUGU---UGGC- -5'
23350 3' -56.1 NC_005259.1 + 6317 0.7 0.484077
Target:  5'- cGGCAugACCUACcuugccgGGCacACCCACGACgGg -3'
miRNA:   3'- -CUGUugUGGGUG-------CCG--UGGGUGUUGgC- -5'
23350 3' -56.1 NC_005259.1 + 6950 0.69 0.557323
Target:  5'- aGCucgcCGCCgACGGCAUCCACAcCCu -3'
miRNA:   3'- cUGuu--GUGGgUGCCGUGGGUGUuGGc -5'
23350 3' -56.1 NC_005259.1 + 7409 0.7 0.465245
Target:  5'- aACGGCAUCCucgucgccgucgGCGGUGCCCGC-GCCGc -3'
miRNA:   3'- cUGUUGUGGG------------UGCCGUGGGUGuUGGC- -5'
23350 3' -56.1 NC_005259.1 + 7609 0.67 0.686029
Target:  5'- uGACAcccuCACCCACgagGGCcggACCUACAccgucGCCGa -3'
miRNA:   3'- -CUGUu---GUGGGUG---CCG---UGGGUGU-----UGGC- -5'
23350 3' -56.1 NC_005259.1 + 7948 0.74 0.28696
Target:  5'- uGC-GCGCCCACGGCugcuuggugGCCCACGcccACCGc -3'
miRNA:   3'- cUGuUGUGGGUGCCG---------UGGGUGU---UGGC- -5'
23350 3' -56.1 NC_005259.1 + 8371 0.66 0.72713
Target:  5'- cGGCGGCGgCCuCGGCAUCgGCGagagccucggcgaGCCGg -3'
miRNA:   3'- -CUGUUGUgGGuGCCGUGGgUGU-------------UGGC- -5'
23350 3' -56.1 NC_005259.1 + 8857 0.68 0.62153
Target:  5'- cACAGCguGCCCGCcgccugccGCACCCAC-GCCGc -3'
miRNA:   3'- cUGUUG--UGGGUGc-------CGUGGGUGuUGGC- -5'
23350 3' -56.1 NC_005259.1 + 9126 0.66 0.7385
Target:  5'- ---cGCGCCC-CGGUACggGCAGCCGu -3'
miRNA:   3'- cuguUGUGGGuGCCGUGggUGUUGGC- -5'
23350 3' -56.1 NC_005259.1 + 12167 0.66 0.7385
Target:  5'- cGGCAcCGCCCuCGGUcgaACCUGCcgGACCGu -3'
miRNA:   3'- -CUGUuGUGGGuGCCG---UGGGUG--UUGGC- -5'
23350 3' -56.1 NC_005259.1 + 14062 0.69 0.557323
Target:  5'- cGACGAgACCagCACGGCggugGCCUACGugCGc -3'
miRNA:   3'- -CUGUUgUGG--GUGCCG----UGGGUGUugGC- -5'
23350 3' -56.1 NC_005259.1 + 15068 0.66 0.70724
Target:  5'- cGugGcCACCC-UGGC-CCUugAGCCGg -3'
miRNA:   3'- -CugUuGUGGGuGCCGuGGGugUUGGC- -5'
23350 3' -56.1 NC_005259.1 + 16630 0.68 0.610757
Target:  5'- aGGCAGgcCACCUACGGCGa-CGCcGCCGa -3'
miRNA:   3'- -CUGUU--GUGGGUGCCGUggGUGuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.