miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23350 3' -56.1 NC_005259.1 + 35794 0.66 0.716698
Target:  5'- cGACGccGCGCCUcaacaggACGGUGCCgUACGACCc -3'
miRNA:   3'- -CUGU--UGUGGG-------UGCCGUGG-GUGUUGGc -5'
23350 3' -56.1 NC_005259.1 + 51071 0.66 0.70724
Target:  5'- aGCAGCGCCU-CGGUggcaugGCCCACGAUa- -3'
miRNA:   3'- cUGUUGUGGGuGCCG------UGGGUGUUGgc -5'
23350 3' -56.1 NC_005259.1 + 44597 0.66 0.70724
Target:  5'- cGGC-AUGCCCGCaGCGCCCuuaGCGuuGCCGc -3'
miRNA:   3'- -CUGuUGUGGGUGcCGUGGG---UGU--UGGC- -5'
23350 3' -56.1 NC_005259.1 + 15068 0.66 0.70724
Target:  5'- cGugGcCACCC-UGGC-CCUugAGCCGg -3'
miRNA:   3'- -CugUuGUGGGuGCCGuGGGugUUGGC- -5'
23350 3' -56.1 NC_005259.1 + 67738 0.67 0.696665
Target:  5'- -cCGAUACCgGCGGCcacuaggccGCCC-CGGCCa -3'
miRNA:   3'- cuGUUGUGGgUGCCG---------UGGGuGUUGGc -5'
23350 3' -56.1 NC_005259.1 + 46833 0.67 0.696665
Target:  5'- aGugAGCGCCC-CGGCgagcuGCCCGaguCCGc -3'
miRNA:   3'- -CugUUGUGGGuGCCG-----UGGGUguuGGC- -5'
23350 3' -56.1 NC_005259.1 + 36851 0.67 0.696665
Target:  5'- uGACGcCGCCCGCugcgccguugcuGGCaccGCCCGC-GCCGa -3'
miRNA:   3'- -CUGUuGUGGGUG------------CCG---UGGGUGuUGGC- -5'
23350 3' -56.1 NC_005259.1 + 33880 0.67 0.696665
Target:  5'- gGugAGCACaCGCGGgaacCACCCGCGcgacggGCCGa -3'
miRNA:   3'- -CugUUGUGgGUGCC----GUGGGUGU------UGGC- -5'
23350 3' -56.1 NC_005259.1 + 63664 0.67 0.686029
Target:  5'- gGACGccggACACCUcgGGCACCgGCGcGCCGg -3'
miRNA:   3'- -CUGU----UGUGGGugCCGUGGgUGU-UGGC- -5'
23350 3' -56.1 NC_005259.1 + 7609 0.67 0.686029
Target:  5'- uGACAcccuCACCCACgagGGCcggACCUACAccgucGCCGa -3'
miRNA:   3'- -CUGUu---GUGGGUG---CCG---UGGGUGU-----UGGC- -5'
23350 3' -56.1 NC_005259.1 + 47303 0.67 0.686029
Target:  5'- gGACAGCGacCCCuuGGCcugACCgGCGGCCu -3'
miRNA:   3'- -CUGUUGU--GGGugCCG---UGGgUGUUGGc -5'
23350 3' -56.1 NC_005259.1 + 64005 0.67 0.686029
Target:  5'- uGACGGCAUaCCACcGCGCCCGaggcgcggcgaGGCCGg -3'
miRNA:   3'- -CUGUUGUG-GGUGcCGUGGGUg----------UUGGC- -5'
23350 3' -56.1 NC_005259.1 + 33291 0.67 0.686029
Target:  5'- cACuGCAUCCACGGCugCgGCucgaucccGCCGu -3'
miRNA:   3'- cUGuUGUGGGUGCCGugGgUGu-------UGGC- -5'
23350 3' -56.1 NC_005259.1 + 37397 0.67 0.675344
Target:  5'- cGCGcCGCCCAUGGUguuguugacgccGCCCGCcguGCCa -3'
miRNA:   3'- cUGUuGUGGGUGCCG------------UGGGUGu--UGGc -5'
23350 3' -56.1 NC_005259.1 + 65129 0.67 0.66462
Target:  5'- cGGC-GCACCgGCGGcCACCCcCGACa- -3'
miRNA:   3'- -CUGuUGUGGgUGCC-GUGGGuGUUGgc -5'
23350 3' -56.1 NC_005259.1 + 50768 0.67 0.66462
Target:  5'- gGACGACACCU-CGGC-CUCGC-GCUGg -3'
miRNA:   3'- -CUGUUGUGGGuGCCGuGGGUGuUGGC- -5'
23350 3' -56.1 NC_005259.1 + 46367 0.67 0.663546
Target:  5'- cGAUGGCACCgCcCGGC-CCCaucucacGCAGCCGc -3'
miRNA:   3'- -CUGUUGUGG-GuGCCGuGGG-------UGUUGGC- -5'
23350 3' -56.1 NC_005259.1 + 52214 0.67 0.653867
Target:  5'- gGGCAccgcguuccGCGCCCGCugauCACCCACuACCGc -3'
miRNA:   3'- -CUGU---------UGUGGGUGcc--GUGGGUGuUGGC- -5'
23350 3' -56.1 NC_005259.1 + 60544 0.67 0.643094
Target:  5'- cGCAGcCGCUCGuCGGCauGCCCGguGCCGa -3'
miRNA:   3'- cUGUU-GUGGGU-GCCG--UGGGUguUGGC- -5'
23350 3' -56.1 NC_005259.1 + 19841 0.67 0.643094
Target:  5'- cGGCuGCugCCGCgcucgguguGGCGCUCGCGcccGCCGg -3'
miRNA:   3'- -CUGuUGugGGUG---------CCGUGGGUGU---UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.