miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23350 5' -57.8 NC_005259.1 + 11864 0.66 0.66826
Target:  5'- cGUCGGCgaaCGUGAC--CGCCGCaccgucccaauCGCCGAc -3'
miRNA:   3'- -UAGCUG---GCACUGuuGCGGUG-----------GCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 48162 0.66 0.66826
Target:  5'- cUCGcCCGaaACcgccccCGCCGCCGCCGGg -3'
miRNA:   3'- uAGCuGGCacUGuu----GCGGUGGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 24287 0.66 0.66826
Target:  5'- cUCGACCucggGAUggUGCUGCUGCgCGAu -3'
miRNA:   3'- uAGCUGGca--CUGuuGCGGUGGCG-GCU- -5'
23350 5' -57.8 NC_005259.1 + 52456 0.66 0.66826
Target:  5'- uUCGGCgGaUGGCAGa-CCACCGCCc- -3'
miRNA:   3'- uAGCUGgC-ACUGUUgcGGUGGCGGcu -5'
23350 5' -57.8 NC_005259.1 + 17384 0.66 0.657658
Target:  5'- gGUCGACUGcGACAcUGCCGCCcaGCUa- -3'
miRNA:   3'- -UAGCUGGCaCUGUuGCGGUGG--CGGcu -5'
23350 5' -57.8 NC_005259.1 + 16624 0.66 0.657658
Target:  5'- --gGGCCGaGGCAggccaccuacgGCGaCGCCGCCGAc -3'
miRNA:   3'- uagCUGGCaCUGU-----------UGCgGUGGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 4120 0.66 0.657658
Target:  5'- -gCGGCCucGACGugGCCaagACCGUCGGc -3'
miRNA:   3'- uaGCUGGcaCUGUugCGG---UGGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 5022 0.66 0.657658
Target:  5'- gAUCGAuCCGgccccacacGACAGCGCCA-CGuuGAu -3'
miRNA:   3'- -UAGCU-GGCa--------CUGUUGCGGUgGCggCU- -5'
23350 5' -57.8 NC_005259.1 + 56390 0.66 0.657658
Target:  5'- cGUCGGCUGaucgucucGAUggUGCCcggcCCGCCGAg -3'
miRNA:   3'- -UAGCUGGCa-------CUGuuGCGGu---GGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 45399 0.66 0.656596
Target:  5'- gGUCGccGCCGagcgcgcUGAUGGcCGCCGCCGCUGc -3'
miRNA:   3'- -UAGC--UGGC-------ACUGUU-GCGGUGGCGGCu -5'
23350 5' -57.8 NC_005259.1 + 22581 0.66 0.647034
Target:  5'- -cCGAguaCGUGGuCGACGCgaucaagcugcaCGCCGCCGAc -3'
miRNA:   3'- uaGCUg--GCACU-GUUGCG------------GUGGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 44503 0.66 0.647034
Target:  5'- --aGACCGgggugcccUGGCcacccACGCCGCCGCCc- -3'
miRNA:   3'- uagCUGGC--------ACUGu----UGCGGUGGCGGcu -5'
23350 5' -57.8 NC_005259.1 + 53162 0.66 0.647034
Target:  5'- -aCG-CCGaGGCcgaucuCGCCACCGCCGc -3'
miRNA:   3'- uaGCuGGCaCUGuu----GCGGUGGCGGCu -5'
23350 5' -57.8 NC_005259.1 + 36235 0.66 0.640653
Target:  5'- cUUGGCCagcgcgagcgccugcGUcGGCAGCGCCA-CGCCGGa -3'
miRNA:   3'- uAGCUGG---------------CA-CUGUUGCGGUgGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 30154 0.66 0.636398
Target:  5'- cUCGACCG-GGC--CGCCuacagGCCGCCa- -3'
miRNA:   3'- uAGCUGGCaCUGuuGCGG-----UGGCGGcu -5'
23350 5' -57.8 NC_005259.1 + 29927 0.66 0.636398
Target:  5'- cAUCGACgCGUGGC--CGCCACgCGgcCCGGu -3'
miRNA:   3'- -UAGCUG-GCACUGuuGCGGUG-GC--GGCU- -5'
23350 5' -57.8 NC_005259.1 + 28209 0.66 0.636398
Target:  5'- -gUGuCCGUaGACGGucgugcCGCCACCGUCGGc -3'
miRNA:   3'- uaGCuGGCA-CUGUU------GCGGUGGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 20276 0.66 0.636398
Target:  5'- gAUgGAUCGUGGacGCGCUACCG-CGAg -3'
miRNA:   3'- -UAgCUGGCACUguUGCGGUGGCgGCU- -5'
23350 5' -57.8 NC_005259.1 + 11412 0.66 0.635334
Target:  5'- uUCGGCuCGUGGCcggugcaacgggGAUGCUugggccgcucgcuGCCGCCGGu -3'
miRNA:   3'- uAGCUG-GCACUG------------UUGCGG-------------UGGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 309 0.66 0.63427
Target:  5'- cUCGACCGggggugcguccgGcCAACGCaCACCuCCGAc -3'
miRNA:   3'- uAGCUGGCa-----------CuGUUGCG-GUGGcGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.