miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23350 5' -57.8 NC_005259.1 + 309 0.66 0.63427
Target:  5'- cUCGACCGggggugcguccgGcCAACGCaCACCuCCGAc -3'
miRNA:   3'- uAGCUGGCa-----------CuGUUGCG-GUGGcGGCU- -5'
23350 5' -57.8 NC_005259.1 + 629 1.07 0.001097
Target:  5'- gAUCGACCGUGACAACGCCACCGCCGAg -3'
miRNA:   3'- -UAGCUGGCACUGUUGCGGUGGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 1831 0.67 0.604502
Target:  5'- -cCGACC-UGcuCGcCGCUGCCGCCGAg -3'
miRNA:   3'- uaGCUGGcACu-GUuGCGGUGGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 4120 0.66 0.657658
Target:  5'- -gCGGCCucGACGugGCCaagACCGUCGGc -3'
miRNA:   3'- uaGCUGGcaCUGUugCGG---UGGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 4480 0.67 0.593903
Target:  5'- cAUCGGCgGUGGacCAuggugauCGCCACCgcGCCGGg -3'
miRNA:   3'- -UAGCUGgCACU--GUu------GCGGUGG--CGGCU- -5'
23350 5' -57.8 NC_005259.1 + 5022 0.66 0.657658
Target:  5'- gAUCGAuCCGgccccacacGACAGCGCCA-CGuuGAu -3'
miRNA:   3'- -UAGCU-GGCa--------CUGUUGCGGUgGCggCU- -5'
23350 5' -57.8 NC_005259.1 + 5160 0.71 0.367451
Target:  5'- cAUCGACUGaggggaccgaccaaUGAaacucucCGACGCCGCCGCCa- -3'
miRNA:   3'- -UAGCUGGC--------------ACU-------GUUGCGGUGGCGGcu -5'
23350 5' -57.8 NC_005259.1 + 5930 0.67 0.583334
Target:  5'- cGUCGACCGUaaggGAgAACGCUACgaGCgGGa -3'
miRNA:   3'- -UAGCUGGCA----CUgUUGCGGUGg-CGgCU- -5'
23350 5' -57.8 NC_005259.1 + 6894 0.69 0.461374
Target:  5'- cGUCGcCCGcaacGCAcGCGCCGCCGCCa- -3'
miRNA:   3'- -UAGCuGGCac--UGU-UGCGGUGGCGGcu -5'
23350 5' -57.8 NC_005259.1 + 7426 0.7 0.387069
Target:  5'- cGUCGGCgGUGcCcGCGCCGCauggcagCGCCGAg -3'
miRNA:   3'- -UAGCUGgCACuGuUGCGGUG-------GCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 7569 0.71 0.379311
Target:  5'- -aCGccACCGUucGCGcCGCCGCCGCCGAc -3'
miRNA:   3'- uaGC--UGGCAc-UGUuGCGGUGGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 7652 0.7 0.43295
Target:  5'- uUCGACCGccgucgucGugAGCGCC-CCGCCu- -3'
miRNA:   3'- uAGCUGGCa-------CugUUGCGGuGGCGGcu -5'
23350 5' -57.8 NC_005259.1 + 8039 0.67 0.604502
Target:  5'- uUCGcgaACUGUccGACAcCGCCggucGCCGCCGAc -3'
miRNA:   3'- uAGC---UGGCA--CUGUuGCGG----UGGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 8549 0.67 0.550846
Target:  5'- cUCGGCgGUGuagcccaugcgccGCAGCaccGCCACCGCCc- -3'
miRNA:   3'- uAGCUGgCAC-------------UGUUG---CGGUGGCGGcu -5'
23350 5' -57.8 NC_005259.1 + 8825 0.66 0.625758
Target:  5'- --gGGCCgGUGAguUGACGCgCugCGCCGAc -3'
miRNA:   3'- uagCUGG-CACU--GUUGCG-GugGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 11119 0.67 0.562319
Target:  5'- -gCGACgGUGACggUGCgaGCCGUCGc -3'
miRNA:   3'- uaGCUGgCACUGuuGCGg-UGGCGGCu -5'
23350 5' -57.8 NC_005259.1 + 11412 0.66 0.635334
Target:  5'- uUCGGCuCGUGGCcggugcaacgggGAUGCUugggccgcucgcuGCCGCCGGu -3'
miRNA:   3'- uAGCUG-GCACUG------------UUGCGG-------------UGGCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 11659 0.71 0.379311
Target:  5'- ---uACCGUGGCGGCcacaucgaGCCACCGCCu- -3'
miRNA:   3'- uagcUGGCACUGUUG--------CGGUGGCGGcu -5'
23350 5' -57.8 NC_005259.1 + 11864 0.66 0.66826
Target:  5'- cGUCGGCgaaCGUGAC--CGCCGCaccgucccaauCGCCGAc -3'
miRNA:   3'- -UAGCUG---GCACUGuuGCGGUG-----------GCGGCU- -5'
23350 5' -57.8 NC_005259.1 + 13408 0.68 0.52097
Target:  5'- cUCGGCCuuccUGGcCGGgGUCGCCGCCGGg -3'
miRNA:   3'- uAGCUGGc---ACU-GUUgCGGUGGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.