miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23351 3' -60.2 NC_005259.1 + 46977 0.66 0.560756
Target:  5'- aCGcCGCcgaUGAUCg-GGCCGaGGGUGCGc -3'
miRNA:   3'- aGC-GCG---ACUAGagCUGGCcCCCACGC- -5'
23351 3' -60.2 NC_005259.1 + 51994 0.66 0.560756
Target:  5'- cCGaCGCcGAUCUCGACCGGa--UGCa -3'
miRNA:   3'- aGC-GCGaCUAGAGCUGGCCcccACGc -5'
23351 3' -60.2 NC_005259.1 + 41966 0.66 0.550559
Target:  5'- cUCGCGUugacuuguccggUGAUCUCagGACCGGcGGUGa- -3'
miRNA:   3'- -AGCGCG------------ACUAGAG--CUGGCCcCCACgc -5'
23351 3' -60.2 NC_005259.1 + 32879 0.66 0.54042
Target:  5'- gCGCGgUGAUCgauucACCGGGGGcgaggGUGa -3'
miRNA:   3'- aGCGCgACUAGagc--UGGCCCCCa----CGC- -5'
23351 3' -60.2 NC_005259.1 + 27460 0.67 0.490788
Target:  5'- gUCGCGCggGAaaUUggGGCCGGGgucGGUGUGg -3'
miRNA:   3'- -AGCGCGa-CU--AGagCUGGCCC---CCACGC- -5'
23351 3' -60.2 NC_005259.1 + 20921 0.67 0.490788
Target:  5'- cCGaGCUGuucCUCGAugaUCGGGGGUGgGg -3'
miRNA:   3'- aGCgCGACua-GAGCU---GGCCCCCACgC- -5'
23351 3' -60.2 NC_005259.1 + 50411 0.67 0.481111
Target:  5'- gCGCGCcGGUgcCUUGACCGGcucgggcaGcGGUGCGg -3'
miRNA:   3'- aGCGCGaCUA--GAGCUGGCC--------C-CCACGC- -5'
23351 3' -60.2 NC_005259.1 + 33138 0.67 0.471528
Target:  5'- cCGCGCgUGAUCUUgccguaGACCGccugaggcaccGGGGUGUc -3'
miRNA:   3'- aGCGCG-ACUAGAG------CUGGC-----------CCCCACGc -5'
23351 3' -60.2 NC_005259.1 + 60228 0.67 0.461099
Target:  5'- -gGCGCUGAgCUCG-CUGGcacgcuugcgugcGGGUGCa -3'
miRNA:   3'- agCGCGACUaGAGCuGGCC-------------CCCACGc -5'
23351 3' -60.2 NC_005259.1 + 31510 0.67 0.452657
Target:  5'- cCGCGCcgGAcuugCUUGAUCGGGguGGUGCc -3'
miRNA:   3'- aGCGCGa-CUa---GAGCUGGCCC--CCACGc -5'
23351 3' -60.2 NC_005259.1 + 53543 0.69 0.365026
Target:  5'- -gGUGCccGGUgUCGGCuCGGGcGGUGCGa -3'
miRNA:   3'- agCGCGa-CUAgAGCUG-GCCC-CCACGC- -5'
23351 3' -60.2 NC_005259.1 + 67365 0.7 0.321334
Target:  5'- cUCGCGCcgGAUCUuggggaaauuacgcuUGGCCucGGGGGUGUc -3'
miRNA:   3'- -AGCGCGa-CUAGA---------------GCUGG--CCCCCACGc -5'
23351 3' -60.2 NC_005259.1 + 14162 0.71 0.276337
Target:  5'- gUCGUGUgGAUCUCG-CCGGGcGGgugGCa -3'
miRNA:   3'- -AGCGCGaCUAGAGCuGGCCC-CCa--CGc -5'
23351 3' -60.2 NC_005259.1 + 66923 0.76 0.136249
Target:  5'- gCGCGC-GGUgCUCGACCGGGGuGaGCGg -3'
miRNA:   3'- aGCGCGaCUA-GAGCUGGCCCC-CaCGC- -5'
23351 3' -60.2 NC_005259.1 + 298 1.08 0.000605
Target:  5'- cUCGCGCUGAUCUCGACCGGGGGUGCGu -3'
miRNA:   3'- -AGCGCGACUAGAGCUGGCCCCCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.