Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23351 | 3' | -60.2 | NC_005259.1 | + | 51994 | 0.66 | 0.560756 |
Target: 5'- cCGaCGCcGAUCUCGACCGGa--UGCa -3' miRNA: 3'- aGC-GCGaCUAGAGCUGGCCcccACGc -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 46977 | 0.66 | 0.560756 |
Target: 5'- aCGcCGCcgaUGAUCg-GGCCGaGGGUGCGc -3' miRNA: 3'- aGC-GCG---ACUAGagCUGGCcCCCACGC- -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 41966 | 0.66 | 0.550559 |
Target: 5'- cUCGCGUugacuuguccggUGAUCUCagGACCGGcGGUGa- -3' miRNA: 3'- -AGCGCG------------ACUAGAG--CUGGCCcCCACgc -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 32879 | 0.66 | 0.54042 |
Target: 5'- gCGCGgUGAUCgauucACCGGGGGcgaggGUGa -3' miRNA: 3'- aGCGCgACUAGagc--UGGCCCCCa----CGC- -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 20921 | 0.67 | 0.490788 |
Target: 5'- cCGaGCUGuucCUCGAugaUCGGGGGUGgGg -3' miRNA: 3'- aGCgCGACua-GAGCU---GGCCCCCACgC- -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 27460 | 0.67 | 0.490788 |
Target: 5'- gUCGCGCggGAaaUUggGGCCGGGgucGGUGUGg -3' miRNA: 3'- -AGCGCGa-CU--AGagCUGGCCC---CCACGC- -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 50411 | 0.67 | 0.481111 |
Target: 5'- gCGCGCcGGUgcCUUGACCGGcucgggcaGcGGUGCGg -3' miRNA: 3'- aGCGCGaCUA--GAGCUGGCC--------C-CCACGC- -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 33138 | 0.67 | 0.471528 |
Target: 5'- cCGCGCgUGAUCUUgccguaGACCGccugaggcaccGGGGUGUc -3' miRNA: 3'- aGCGCG-ACUAGAG------CUGGC-----------CCCCACGc -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 60228 | 0.67 | 0.461099 |
Target: 5'- -gGCGCUGAgCUCG-CUGGcacgcuugcgugcGGGUGCa -3' miRNA: 3'- agCGCGACUaGAGCuGGCC-------------CCCACGc -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 31510 | 0.67 | 0.452657 |
Target: 5'- cCGCGCcgGAcuugCUUGAUCGGGguGGUGCc -3' miRNA: 3'- aGCGCGa-CUa---GAGCUGGCCC--CCACGc -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 53543 | 0.69 | 0.365026 |
Target: 5'- -gGUGCccGGUgUCGGCuCGGGcGGUGCGa -3' miRNA: 3'- agCGCGa-CUAgAGCUG-GCCC-CCACGC- -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 67365 | 0.7 | 0.321334 |
Target: 5'- cUCGCGCcgGAUCUuggggaaauuacgcuUGGCCucGGGGGUGUc -3' miRNA: 3'- -AGCGCGa-CUAGA---------------GCUGG--CCCCCACGc -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 14162 | 0.71 | 0.276337 |
Target: 5'- gUCGUGUgGAUCUCG-CCGGGcGGgugGCa -3' miRNA: 3'- -AGCGCGaCUAGAGCuGGCCC-CCa--CGc -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 66923 | 0.76 | 0.136249 |
Target: 5'- gCGCGC-GGUgCUCGACCGGGGuGaGCGg -3' miRNA: 3'- aGCGCGaCUA-GAGCUGGCCCC-CaCGC- -5' |
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23351 | 3' | -60.2 | NC_005259.1 | + | 298 | 1.08 | 0.000605 |
Target: 5'- cUCGCGCUGAUCUCGACCGGGGGUGCGu -3' miRNA: 3'- -AGCGCGACUAGAGCUGGCCCCCACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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